Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1475
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0750 - 6315126-6315896,6316371-6316784                           29   5.4  
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417...    29   5.4  
09_04_0071 - 14313737-14315091,14316131-14316207,14316604-143167...    28   7.1  
01_06_1100 + 34530132-34530485,34530544-34530705                       28   7.1  
05_04_0235 + 19291204-19291769,19291860-19292250                       28   9.4  

>11_01_0750 - 6315126-6315896,6316371-6316784
          Length = 394

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 502 RPWTAAMAGAEQSCCLPLS 558
           RPW  A+A A+++ CLPL+
Sbjct: 4   RPWGEALAAAQRAFCLPLA 22


>05_05_0062 +
           22039410-22039985,22041467-22041555,22041638-22041770,
           22041864-22042093,22042199-22042675,22042748-22042934,
           22043536-22043574,22043624-22044052
          Length = 719

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 502 EHNHSPLGGPYDRLP 458
           +H+ + LGGPYDRLP
Sbjct: 528 KHHENRLGGPYDRLP 542


>09_04_0071 -
           14313737-14315091,14316131-14316207,14316604-14316725,
           14316838-14316924,14317000-14317066,14317135-14317290,
           14318689-14318837
          Length = 670

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 520 MAGAEQSCCLPLSTLHKPRLKKVKS*RTGNTV*ASSFQSRMVRG 651
           + G ++SC  P S   KPR   V S +T  +  AS   ++++RG
Sbjct: 403 LEGVQKSCVQPASPPRKPRQDLVASVKTEISCLASRSDAKVLRG 446


>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 734 TARHRSRVHPYYLEPLRTPTVRFQRSFLPRTIRLWNELAYTVF 606
           +A+H    H   L+ L+ PT + +   +   + L+NEL  T+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147


>05_04_0235 + 19291204-19291769,19291860-19292250
          Length = 318

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 468 SYGPPNGEWLCSPMDCSNGRGRAKLLPTLKYSP 566
           SY  P+ EW C+P     GRG  +L     Y P
Sbjct: 163 SYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGP 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,042,951
Number of Sequences: 37544
Number of extensions: 408814
Number of successful extensions: 886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)