Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1475
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical...    29   3.6  
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    28   6.4  
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF101310-2|AAC69215.1|  299|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 697 WSPCVHPQCVSRDLFCH 647
           WS CVHP CV+  +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


>AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical
           protein Y39B6A.16 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 730 PATGVEFIHTTWSPCVHPQCVSRDLFCHVPSGFGMNSPTRCFPCAMT 590
           P+  +EF  T    C+H  C+  +  CH P       P +C  C+ T
Sbjct: 13  PSKQIEFYLTN---CMHMFCIECERLCHPPE----EEPLKCIQCSKT 52


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +3

Query: 312 NMFIFEYVYRDIRMKLLHANISMSVSKCSILF*KSVFNYNILFYFIT 452
           N  + +    ++R++ ++ +I      C ILF  S   + + FY++T
Sbjct: 72  NSIVHQTTMMEVRIRQIYRSIVFDEDHCHILFNSSECVFELYFYYMT 118


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 705 ILPGAPAYTHSAFPEIFFATYHP 637
           I PGAPA +H+A  E  F+T  P
Sbjct: 112 IAPGAPAASHAAPEEFVFSTIRP 134


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 400 ILHLETDIEMFACNNFI----LISLYTYSNINILSFNWL*NV 287
           ++H +    +F C NF+    +I++Y    +NIL  NW  N+
Sbjct: 38  VVHYDYKSAVFGCMNFLTHLDMITMYFVLFLNILHSNWSINI 79


>AF101310-2|AAC69215.1|  299|Caenorhabditis elegans Hypothetical
           protein C39F7.1 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 662 SGNALWVYAGAPGSMDELY 718
           SGN +W Y GAP S DEL+
Sbjct: 158 SGN-MWFYIGAPRSSDELF 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,431
Number of Sequences: 27780
Number of extensions: 361124
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)