Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1475
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   9.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 107 AKTHYCTATEIALLSSS-TDRQ*DFLFRFPVILFMITDSRAYLTRR 241
           A  HY T  +  L+ +S  D      F +P++L ++    A LTR+
Sbjct: 794 AMHHYPTREDNLLVCNSYVDASYMIAFAYPIMLIVVCTVYAVLTRK 839


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 620 RVHSKAGWYVAKKISGNALWVYAGAPGSMDELY 718
           ++  +AG  ++  I+ N  W   G PG  +E+Y
Sbjct: 179 QLQDEAGGDISSFIT-NGEWDLLGVPGKRNEIY 210


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 578 KRGLWRVLKGRQQLCSAPAIAAVH 507
           K GL+ VL+G + + S   I+  H
Sbjct: 618 KSGLYHVLRGNENIYSGKLISMRH 641


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 618 GEFIPKPDGTW 650
           G F+P+P G W
Sbjct: 124 GNFLPRPMGPW 134


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 701 YLEPLRTPTVRFQRSFLPRTIRLW 630
           Y+E +  P   +  +FLPR +  W
Sbjct: 114 YIEQIPIPVPVYYGNFLPRPMGPW 137



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 618 GEFIPKPDGTW 650
           G F+P+P G W
Sbjct: 127 GNFLPRPMGPW 137


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 701 YLEPLRTPTVRFQRSFLPRTIRLW 630
           Y+E +  P   +  +FLPR +  W
Sbjct: 114 YIEQIPIPVPVYYGNFLPRPMGPW 137



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 618 GEFIPKPDGTW 650
           G F+P+P G W
Sbjct: 127 GNFLPRPMGPW 137


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 701 YLEPLRTPTVRFQRSFLPRTIRLW 630
           Y+E +  P   +  +FLPR +  W
Sbjct: 114 YIEQIPIPVPVYYGNFLPRPMGPW 137



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 618 GEFIPKPDGTW 650
           G F+P+P G W
Sbjct: 127 GNFLPRPMGPW 137


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 701 YLEPLRTPTVRFQRSFLPRTIRLW 630
           Y+E +  P   +  +FLPR +  W
Sbjct: 114 YIEQIPIPVPVYYGNFLPRPMGPW 137



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 618 GEFIPKPDGTW 650
           G F+P+P G W
Sbjct: 127 GNFLPRPMGPW 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,127
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)