Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1472
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631     28   2.6  
12_01_0957 + 9531045-9531069,9531904-9531971,9532659-9532882,953...    27   3.4  
02_03_0167 - 15923872-15925683                                         26   7.9  

>11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631
          Length = 417

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 219 TLGQEGQVPGSHPGCMDDIPAGHKICPRPRRVNSRETL 332
           TLG    V  SHP  + +I AG     RP R  +RE +
Sbjct: 69  TLGATPVVVSSHPDTVREILAGAAFRDRPARAAARELI 106


>12_01_0957 +
           9531045-9531069,9531904-9531971,9532659-9532882,
           9533299-9533380,9533513-9533572,9533717-9533795,
           9533935-9534082,9534237-9534312,9534603-9534776,
           9535908-9536058,9536264-9536292,9536388-9536536,
           9536652-9536754,9537043-9537098,9537209-9537332,
           9537547-9537609,9537707-9537766,9537942-9538103,
           9538262-9538332,9538500-9538593,9538675-9538811,
           9538915-9538995,9539402-9539524,9539585-9539693
          Length = 815

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 192 GQLPTTVDYCQTSRAGSRYALPPV-NAGLHYYYLTVRYNQNAAARPNDL 49
           G LP+         A SR  +  V N G HYY   +R+  N  A  + +
Sbjct: 693 GCLPSLTRITSAMSAASRLCIEHVENIGYHYYTTLIRWRDNFMANKDKI 741


>02_03_0167 - 15923872-15925683
          Length = 603

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 165 SSQL*LAIAPDHPLRRINTLGQEGQVPGSHPGCMDDIPAGH 287
           SSQ+  ++A  + +RR      EG + G   GC+D + A +
Sbjct: 131 SSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGCVDSVSASN 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,838,024
Number of Sequences: 37544
Number of extensions: 227632
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)