Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1472
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49829-6|AAA93387.1|  498|Caenorhabditis elegans Hypothetical pr...    30   0.44 
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical...    28   1.8  
U41279-19|AAK31428.1|  357|Caenorhabditis elegans Hypothetical p...    27   3.1  
AC024859-2|AAK29971.2|  502|Caenorhabditis elegans Set (trithora...    26   7.2  

>U49829-6|AAA93387.1|  498|Caenorhabditis elegans Hypothetical
           protein F27D9.2 protein.
          Length = 498

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 199 TLLGESIPWARKVKYLAVILDAWMTFRL 282
           TL G SIPW   +  L V++ AW+  R+
Sbjct: 454 TLYGPSIPWLILIVNLVVLISAWIILRV 481


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 121 YWW*GISRARTASLTVVNCSWQLPLITLLGESIPWARKVKY 243
           +WW G+ +  +      N +W LP +      IPWAR  K+
Sbjct: 535 FWWVGLIKKDS------NWTWMLPELVTDNTPIPWARDQKF 569


>AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.2 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 163 SN*PC-GLAICPTTSKCWFALLLPYGKVQPERCCSSQ*LVRHSREVTWFC 17
           SN  C G    PT  +CWF  ++    V  +RCC  + +   S   T  C
Sbjct: 64  SNKSCRGPTKAPTFGRCWFGAVM----VDGDRCCDKENVTEGSPNSTQTC 109


>U41279-19|AAK31428.1|  357|Caenorhabditis elegans Hypothetical
           protein C17C3.1a protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 DHPLRRINTLGQEGQVPGSHPGCMDDIP 278
           D  +R +  LG   +VP +HP  M  +P
Sbjct: 9   DSDIRHLEPLGNSWEVPSNHPVIMTTVP 36


>AC024859-2|AAK29971.2|  502|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 27
           protein.
          Length = 502

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 48  TSHWDEQQRSGCTLP*GNSNANQHLLVVGHIASPHG*FDSSQL*LAI 188
           TSH D +  +  T+  G  +  +HLL  G +   HG FD  +L + I
Sbjct: 329 TSHCDVKAGNEVTIFYGCRSKGEHLLHNGFVPIYHGKFDVLKLKIGI 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,813,153
Number of Sequences: 27780
Number of extensions: 179756
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)