Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1471
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0214 + 15711576-15711891,15712615-15713903,15714410-157151...    29   3.2  
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    29   5.7  
07_01_0877 - 7276300-7276967,7277050-7277173                           28   7.5  
10_08_0469 + 18149039-18149420,18149537-18149649                       28   9.9  

>09_04_0214 +
           15711576-15711891,15712615-15713903,15714410-15715117,
           15715369-15715908
          Length = 950

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 189 SLSAALFLGC*LISSTFPLLIASLHNVTSLYNHQ 88
           SL+   FLG  +I+    LL   LH V +LYNH+
Sbjct: 820 SLTLRSFLGLFIITGASSLLALFLHVVITLYNHR 853


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 217 EHRKSSSPSCVRSPG---FILVPFMP*RVTPTFASDVPSSTETHPQQGREIKRNKTF*PT 387
           E R SS  S  R P      +V F+P + T T   DVP+   +HP   R I  +  F  T
Sbjct: 38  EVRFSSDKSAARKPKPPQAEVVNFVPKQGTGTTQDDVPNVDGSHPNIRRRIPESSFFSST 97

Query: 388 RLITVRL 408
           + +   L
Sbjct: 98  QTLKSEL 104


>07_01_0877 - 7276300-7276967,7277050-7277173
          Length = 263

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 741 GKAFHETRQLVKVMSYSDIRRNNFVKVVSGPKIVREIKNFK 619
           GK  H   +L       D   N F KVV+  +I REIK+ K
Sbjct: 62  GKDGHPVAKLFSFKGMIDRTNNLFKKVVAHHQIAREIKDIK 102


>10_08_0469 + 18149039-18149420,18149537-18149649
          Length = 164

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 388 VWVKKFYSSLFLFLVGDES 332
           +W+K+FYSS+  FL G E+
Sbjct: 138 IWLKQFYSSVETFLSGSET 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,181,317
Number of Sequences: 37544
Number of extensions: 452883
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)