Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1471
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z81472-1|CAB03889.1|  173|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    28   8.9  
AC024200-14|AAF36005.1|  557|Caenorhabditis elegans Hypothetical...    28   8.9  

>CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical
           protein C52D10.12 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -2

Query: 561 SAQERFVTRLALLGSRYLSIAPRMCKMVTKNQISDRTHLVL 439
           SA+   V+ L  +G   +++ PR+ K+ TK+++SD+  L+L
Sbjct: 601 SARRVDVSALMAMGDDAINV-PRLAKVYTKDELSDKYILIL 640


>Z81472-1|CAB03889.1|  173|Caenorhabditis elegans Hypothetical
           protein C16D6.1 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 182 DSER*AKDCVILSIESPLVQAVYGHRALFWFRSCPKESHPHSPP 313
           DSE   K   +++++S +    Y H  + WF   P    PH PP
Sbjct: 37  DSET-GKFVTLINLQSVIPYPPYRHNTM-WFNGGPPGPPPHGPP 78


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 263 KPGDRTQLGLEDFL-CSISHSPSPSAHCPL 177
           K G+    G E+FL C I  +PSP AHC L
Sbjct: 193 KSGECLNFG-ENFLDCYIRSAPSPRAHCSL 221


>AC024200-14|AAF36005.1|  557|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.4 protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 157 LTPKEKCSGQ*ALGEGLCDIEHRKSSSPSCVRSPGFILVPFMP*RVTPTFASDVPSSTET 336
           + P  K SG   L  G+ +++   S +PS    P  +  P  P  +TP  AS  P+   +
Sbjct: 481 IDPAGKKSGSNQLSPGILEVQPSLSRNPSPDPVPSPLTPPVPPSPMTPPDASTKPTDASS 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,750,070
Number of Sequences: 27780
Number of extensions: 409279
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)