Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1468
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    29   0.57 
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.0  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   5.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   7.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.2  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    25   9.2  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   9.2  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +3

Query: 285 AELQ---QLRGLASEQQRSVQSLTLQLQRXXXXXXXXXXXXHRLKELLERETVSGKEKEE 455
           AELQ   +L+  AS  ++   SL ++ +             H++KEL     +     +E
Sbjct: 270 AELQHQAELQDFASNIEQKANSLIMEYKNELQSAEEHFS--HKIKELTSENELKISRLQE 327

Query: 456 RHQQAIKQLEEKHSKAIENLKSEH 527
                +K+++E  S A++ ++++H
Sbjct: 328 EKDSLLKKVQEGASLAMQRVQNKH 351


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 402 RLKELLERETVSGKEKEERHQQAIKQLEEKHSKAIENLKSEH 527
           +L E  E      KE EER + AIKQ +E+ S+  +     H
Sbjct: 260 KLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTH 301


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 402 RLKELLERETVSGKEKEERHQQAIKQLEEKHSKAIE--NLKSE 524
           RLK+  ER      EKE++ ++ I+ +EE+  K  E   LK E
Sbjct: 129 RLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQE 171


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 420 ERETVSGKEKEERHQQAIKQ--LEEKHSKAIENLKSEH 527
           +R+T++ +EKEE+  + + +  +  K  K    LK+E+
Sbjct: 543 QRDTLTAEEKEEKEAKELSKMMMSNKQRKLYSKLKNEN 580


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 402 RLKELLERETVSGKEKEERHQQAIKQLEEKHSK 500
           R  +LLE      K K+ER  + I++ E+K  K
Sbjct: 568 RQAKLLEEIEEENKRKQERELKKIREKEKKRDK 600


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 408 KELLERETVSGKEKEERHQQAIKQLEEKHSKAIENL 515
           +E +E+  +S  EKE +H+     L+ K  + IE+L
Sbjct: 25  RENIEK-VISNMEKEAKHEDDANTLQPKTEEEIESL 59


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 203 SGPLFKLPHLPLAVSEHPLRPRGGLRSDRLVS 108
           SGP FK P+ P+AVSE   R    + S    S
Sbjct: 142 SGP-FKTPYRPVAVSESSSRSSFSMGSSEFAS 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,808
Number of Sequences: 5004
Number of extensions: 21662
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)