Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1468
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   3.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 352 SCRGRRRXKRLSNSRPID*KSCWRERRSAGKKKKNAISRQSNN*KRSTVRRS 507
           S R R    + ++SR    +SC R+R    KKK     +  N  K+    R+
Sbjct: 216 SLRNRTHGFQHTSSRYSRERSCSRDRNREYKKKDRRYEKLHNEKKKLLEERT 267


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 527 RQFCCSITRGGGANARR 577
           R+FC  I  GG +  R+
Sbjct: 92  RKFCAEIAHGGSSKKRK 108


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 276  SHVAELQQLRGLASEQQRSVQSLTLQ 353
            S   + QQL+ + + QQ+S+Q+  +Q
Sbjct: 1058 SQQIQQQQLKRVVTNQQQSIQTSGMQ 1083


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,404
Number of Sequences: 438
Number of extensions: 1774
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)