Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1464
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.9  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 150 FNQNFSNIM*QEEYKFSKMKQIKSRILANHLSIMEGKI 263
           F + F  ++ Q+EY  SK K+IK   L N      GKI
Sbjct: 34  FPKQFKRLLQQKEYHESKKKEIKKGNLKNKKKKDYGKI 71


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 422 RSFSFLILYSKCLIFLKVIICRCPIV 345
           RSFSFL L+S  +   K++ C+  +V
Sbjct: 242 RSFSFLELHSLAIKLSKLVTCKNEVV 267


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 455 ILMISLAF*ELRSFSFLILYSKCLIFLKVIICRCPI 348
           +L +SL +  L     +  +S  L+FLK +IC C +
Sbjct: 366 MLYLSLMYKSLVDLKTIDSFSLKLLFLKFMICSCMV 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,365
Number of Sequences: 5004
Number of extensions: 52651
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)