Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1464
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0391 + 28949067-28949193,28949377-28949596,28949687-289497...    29   4.6  
09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214...    28   8.1  
04_03_1043 - 21957041-21957256,21957347-21957517,21957979-219580...    28   8.1  

>01_06_0391 +
           28949067-28949193,28949377-28949596,28949687-28949732,
           28949838-28949911,28950279-28950359,28950761-28950803,
           28950932-28950993,28951120-28951177
          Length = 236

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 528 TLEISRMFYVTKYAVKCKNINKIWYFDD 445
           T E+SRM +V    +  +N N  WY DD
Sbjct: 195 TYEVSRMIHVRYLYIDDRNPNDTWYRDD 222


>09_04_0464 +
           17820164-17820181,17820972-17821065,17821251-17821429,
           17821959-17822009,17822683-17822739,17822854-17822974,
           17823187-17823253,17823342-17823383,17823629-17823734,
           17823864-17823974,17824248-17824319,17824423-17824524,
           17824597-17824758,17824961-17825119
          Length = 446

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 HLSIMEGKIYTYICIFINFCHKIYY*TVI 323
           H+SI+EG+   Y+ I +NF   + + TV+
Sbjct: 346 HMSILEGRFPEYVIIQLNFVSFVSFLTVL 374


>04_03_1043 -
           21957041-21957256,21957347-21957517,21957979-21958019,
           21958465-21958525,21959191-21960075
          Length = 457

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 450 QNTKFYLCFYILQRILLHRTFVKFLE*NATKMLNI 554
           +  KFY C  + ++++LH  F KF   N  + L++
Sbjct: 316 ERRKFYGCCNVNEKVILHEKFDKFSSFNNLRTLSL 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,343,014
Number of Sequences: 37544
Number of extensions: 243327
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)