Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1464
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97012-12|AAK39146.1|  310|Caenorhabditis elegans Serpentine rec...    31   0.78 
U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    27   9.6  

>U97012-12|AAK39146.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein18 protein.
          Length = 310

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 643 NVIIFLVLVLRHKNVISFRPIILSVCSP*VIFSIFVAFYSRNFTN 509
           ++++ +++ +RHK +    P +L +C+P VIFS F  F  + + N
Sbjct: 103 DLLLAVIMPIRHK-LWQRGPYLLILCTPPVIFSTFAIFIEQLYIN 146


>U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical
           protein B0554.4 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 483 KCKNINKIWYFDDQLSFLGIKK 418
           +C N++ IWY+  +L  L +KK
Sbjct: 492 ECSNVDSIWYYISELGGLPVKK 513


>Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical
           protein W07A12.6 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 282 IYIYMYIFFPPLLKDGLPKFCFLFVS 205
           ++I++YI   P++K  LP+F F  VS
Sbjct: 167 MFIFIYIAIGPIMKKFLPRFTFSSVS 192


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -1

Query: 218 FYLFHFTKFIFFLLHNVGKVLIKFPFVNSRRLKNILFKNTYYCKCNNFICMLLCVVLINI 39
           F++F F  ++F     + K +  FPFVN       + +  + C C   I ++L   L + 
Sbjct: 38  FFMFPFYVYVFKANRVLDKEIPIFPFVNHFYSVIRMVQIIFLCMCTVIIFIILAYTLRST 97

Query: 38  S 36
           S
Sbjct: 98  S 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,515
Number of Sequences: 27780
Number of extensions: 289676
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)