Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1457
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 29 0.40
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.52
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 29 0.52
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 28 0.69
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.2
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 3.7
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 6.5
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 25 6.5
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 8.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.5
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 29.1 bits (62), Expect = 0.40
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 388 QLLNVLLIVSETFRDFLIEGVHQIFKRTAESLSEIIPFAV 269
+L+N+ F D LI G +IF S + +IPFA+
Sbjct: 1055 RLINLTQTSQRMFHDALISGFFKIFSAAVVSATLLIPFAL 1094
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 28.7 bits (61), Expect = 0.52
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 283 IPFAVLHVVLFTLHQSRFFVVIYFVGISFSFDHFTFQIVYVVKDVIAV 140
IPF V+ + LF++ S +F +YF+ F F F F I+ ++++
Sbjct: 496 IPFLVILIELFSILDSLWFHPLYFM---FGFSFFCFGILVTTCIMVSI 540
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 28.7 bits (61), Expect = 0.52
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = -1
Query: 229 FVVIYFVGISFSFDHFTFQIVYVVKDVIAVDRLLGKVGCRKAIIRFFYLRQRRFEFELCH 50
F V+ + D + V + +G G R +FY RQ ++ F L
Sbjct: 174 FPVLLLIPTRLGIDSINESYYDQLLQVFEIRSFVGITGGRPRSAHYFYARQNQYFFYLDP 233
Query: 49 PATRFSHDHT 20
T F+H T
Sbjct: 234 HCTHFAHTTT 243
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 28.3 bits (60), Expect = 0.69
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 418 NHERMPNVVDNDWQLTGTSY 477
+HE P V +NDWQL ++Y
Sbjct: 396 SHEHKPIVSNNDWQLEASAY 415
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -1
Query: 310 RTAESLSEIIPFAVLHVVLFTLHQSRFFVVIYFVGISFSFDHFTFQIVYVVKDVIAVDRL 131
+TA +S I + V+ F L++ R +V+ FS DH+ F + Y V V L
Sbjct: 139 QTALPISIAIIWHVISTYGFALYRQR--IVVGKHAAHFSLDHWIFVVEYYAPIVFYVFNL 196
Query: 130 LG 125
+G
Sbjct: 197 MG 198
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 187 HFTFQIVYV--VKDVIAVDRLLGKVGCRKAIIR 95
H T + V + ++DV AV + L K GC+ +IR
Sbjct: 148 HMTNEFVEIHHLEDVKAVGKKLIKAGCKNVVIR 180
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 280 PFAVLHVVLFTLHQSRFFVVIYFVGISFSFDHFTF 176
PF + LF FF +++F+ SFSF F
Sbjct: 104 PFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFF 138
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 360 PKHFVIFSSKVFTKSSREPQKVSVKLSPSPF 268
PKH V + VFT+ SR +VKL F
Sbjct: 444 PKHQVDLENYVFTEGSRLMSNKAVKLPEGSF 474
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 200 TDSNKINDNEEPRLVKCKQDNMQNGEGDNFTETFCGSLEDLV 325
+D++ N + EPR +++ G+GD+ FC SL DL+
Sbjct: 138 SDTDFDNISTEPRNQTTSPLDLETGQGDH----FCTSLYDLI 175
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 203 DSNKINDNEEPRLVKCKQDNMQNGEGDNFTE-TFCGSL-EDLVNTFDE 340
D+N NE P+++ +N +G N+ + F GS+ ++ N +E
Sbjct: 43 DTNNPGMNESPKILDSSFENSNPQDGPNYEDFDFMGSIHKEFGNNINE 90
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 451 HCPPHLAFVHDFLLRANLHWRQLLNVLLIVSET 353
H H+ VH L +L W Q L L + S T
Sbjct: 171 HTAQHMQIVHKLELNEDLLWFQELRTLKLKSPT 203
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 451 HCPPHLAFVHDFLLRANLHWRQLLNVLLIVSET 353
H H+ VH L +L W Q L L + S T
Sbjct: 171 HTAQHMQIVHKLELNEDLLWFQELRTLKLKSPT 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,747
Number of Sequences: 5004
Number of extensions: 34556
Number of successful extensions: 105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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