Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1457
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0292 - 2200714-2201478,2202691-2203395                           32   0.30 
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156...    29   1.6  
06_01_0476 - 3388176-3389267                                           27   8.6  

>11_01_0292 - 2200714-2201478,2202691-2203395
          Length = 489

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 298 SLSEIIPFAVLHVVLFTLHQSRFFV--VIYFVGISFSFDHFTFQ 173
           S S  IPF     ++F L QSRF +  V+ FV IS +  HF F+
Sbjct: 279 SFSSFIPFDSR--IVFLLPQSRFPIWSVVLFVSISLALSHFIFE 320


>01_05_0410 +
           21914995-21915168,21915268-21915353,21915446-21915656,
           21915869-21915998,21916740-21916924,21917014-21917145,
           21917329-21917433
          Length = 340

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = -1

Query: 415 LLRANLHWRQLLNVLLIVSETFRDFLIEGVHQIFKRTAESLSEIIPFAVLHVVLFTLHQS 236
           LL+   H  Q L +L  + + ++    EG+   +K    S+  I+P+A LH +  T  Q 
Sbjct: 56  LLQTRTHGFQSLGILQSLRKLWQ---YEGIRGFYKGNGASVLRIVPYAALHYM--TYEQY 110

Query: 235 RFFVVIYF 212
           R +++  F
Sbjct: 111 RCWILNNF 118


>06_01_0476 - 3388176-3389267
          Length = 363

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 28  HERIGWQDGRARIRSAAGAN 87
           H R G  +GRAR+R  AGAN
Sbjct: 279 HRRHGDGNGRARLRGLAGAN 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,944
Number of Sequences: 37544
Number of extensions: 220758
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)