Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1457
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   9.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   9.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.6  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 278 GDNFTETFCGS 310
           GD  T+TFCG+
Sbjct: 138 GDKTTKTFCGT 148


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 278 LRRFACCPVYTSPV 237
           L+ +ACCP  T P+
Sbjct: 228 LKMYACCPNDTYPM 241


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 341 KITKCFGNYE 370
           K+ KCFG Y+
Sbjct: 118 KLVKCFGKYK 127


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 341 KITKCFGNYE 370
           K+ KCFG Y+
Sbjct: 118 KLVKCFGKYK 127


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 344 FSHRRCSPNLQEN 306
           FSH RC P + ++
Sbjct: 475 FSHSRCPPEIHKS 487


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 344 FSHRRCSPNLQEN 306
           FSH RC P + ++
Sbjct: 475 FSHSRCPPEIHKS 487


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 248 CKQDNMQNGEGDNFT 292
           CK+D    G G  FT
Sbjct: 580 CKKDKKNAGSGSRFT 594


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 362 FRNIS*FSHRRCSPNL 315
           + NIS F +  C PNL
Sbjct: 571 YGNISHFINHSCDPNL 586


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 320 NLQENRRKSQ*NYPLRRF 267
           N Q N+R    NYP+  F
Sbjct: 578 NAQVNKRSIHNNYPVHTF 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,871
Number of Sequences: 438
Number of extensions: 2155
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)