Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1456
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 247 9e-67
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 183 1e-47
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 182 3e-47
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 163 2e-41
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 159 2e-40
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 155 4e-39
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 111 8e-26
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 104 1e-23
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 103 1e-23
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 102 4e-23
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 95 5e-21
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 95 6e-21
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 88 7e-19
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 87 2e-18
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 75 5e-15
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 75 9e-15
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 63 3e-11
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 56 4e-09
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 52 5e-08
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 45 8e-06
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 43 3e-05
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 2.4
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.4
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 26 4.1
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 25 5.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.2
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 7.2
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 7.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.2
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 9.5
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 25 9.5
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 9.5
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 247 bits (604), Expect = 9e-67
Identities = 123/168 (73%), Positives = 141/168 (83%), Gaps = 2/168 (1%)
Frame = -2
Query: 541 EEHAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFD-SRGDVKVIMATNR 365
EEH+PSIVFID IDA+GTKRYD+ SG EREIQR MLELLNQLDGFD S+ D+KVIMATNR
Sbjct: 281 EEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNR 340
Query: 364 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGA 185
I LDPALIRPGRIDRKI F PDE TKR+IFTIHTS+M L +DVNL ELI KDDLSGA
Sbjct: 341 ISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGA 400
Query: 184 DIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE-GLYL 44
+IKAI +EAGL+ALRERRM+V +DF++++E VL K EG P GLY+
Sbjct: 401 EIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDEGGPAGGLYI 448
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 183 bits (446), Expect = 1e-47
Identities = 84/158 (53%), Positives = 116/158 (73%)
Frame = -2
Query: 541 EEHAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRI 362
+E +P+I+FID +DA+GTKR+DS G+RE+QR MLELLNQLDGF S VKVI ATNR+
Sbjct: 275 KEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 334
Query: 361 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGAD 182
+TLDPAL+R GR+DRK+EFPLP+E+ + I IH+ +M + DD+N EL S D+ +GA
Sbjct: 335 DTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAM 394
Query: 181 IKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 68
+K++C EAG++ALR+ K+ +E F V RK +
Sbjct: 395 LKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSK 432
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 182 bits (443), Expect = 3e-47
Identities = 86/159 (54%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Frame = -2
Query: 538 EHAPSIVFIDGIDAVGTKRYDSNSG-GEREIQRXMLELLNQLDGFDSRGDVKVIMATNRI 362
EHAPSI+F+D ID++G+ R DS+ G G+ E+QR MLELLNQLDGF++ ++KVIMATNRI
Sbjct: 236 EHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 295
Query: 361 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGAD 182
+ LDPAL+RPGRIDRKIEFP P + + I IH+ M L ++L + + SGA+
Sbjct: 296 DILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAE 355
Query: 181 IKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEG 65
+K +CTEAG+ ALRERR+ VT EDF+ + VL + G
Sbjct: 356 LKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNKGDSG 394
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 163 bits (396), Expect = 2e-41
Identities = 77/148 (52%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Frame = -2
Query: 538 EHAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIE 359
E+AP+I+FID IDA+ TKR+D+ +G +RE+QR ++ELL Q+DGFD +VKVIMATNR +
Sbjct: 225 ENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRAD 284
Query: 358 TLDPALIRPGRIDRKIEFP-LPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGAD 182
TLDPAL+RPGR+DRKIEFP D + +R +F T++M L+ +V+L IM D SGA
Sbjct: 285 TLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQ 344
Query: 181 IKAICTEAGLMALRERRMKVTNEDFKKS 98
I AI +AGL+A+R+ R + D +++
Sbjct: 345 IAAIMQDAGLLAVRKSRGVILQSDIEEA 372
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 159 bits (387), Expect = 2e-40
Identities = 74/161 (45%), Positives = 107/161 (66%), Gaps = 1/161 (0%)
Frame = -2
Query: 541 EEHAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRI 362
+EH P ++F+D IDA+G +R+ + +REIQR ++ELLNQ+DGFD G K+IMATNR
Sbjct: 222 KEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRP 281
Query: 361 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGAD 182
+TLDPAL+RPGR+DRKIE PLP+E + I IH +++ +++ L+ D +GAD
Sbjct: 282 DTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGAD 341
Query: 181 IKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK-EGT 62
++ + TEAG +A++E R V D + V KK EGT
Sbjct: 342 LRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGT 382
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 155 bits (376), Expect = 4e-39
Identities = 73/164 (44%), Positives = 106/164 (64%)
Frame = -2
Query: 523 IVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIETLDPA 344
I+F D IDA+G R+D +GG+ E+QR MLEL+ QLDGFD RG++KV+ ATNR TLD A
Sbjct: 275 IIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEA 334
Query: 343 LIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICT 164
L+RPGRIDRK+EF LPD + + I IH M + D+ + +GA+++++CT
Sbjct: 335 LMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCT 394
Query: 163 EAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL*MYS 32
EAG+ A+R RR T +DF + + V+ ++ + Y+ M S
Sbjct: 395 EAGMFAIRARRRVATEKDFLDAVQKVVKGNQKFSSTADYMNMSS 438
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 111 bits (266), Expect = 8e-26
Identities = 54/136 (39%), Positives = 86/136 (63%)
Frame = -2
Query: 541 EEHAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRI 362
E+++P+I+FID ID++ KR +N ER R + +LL +DG +R +V V+ ATNR
Sbjct: 314 EKNSPAIIFIDEIDSIAPKREKTNGEVER---RVVSQLLTLMDGMKARSNVVVMAATNRP 370
Query: 361 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGAD 182
++DPAL R GR DR+++ +PD + I IHT M LADDV+L ++ G+D
Sbjct: 371 NSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSD 430
Query: 181 IKAICTEAGLMALRER 134
+ ++C+EA + +RE+
Sbjct: 431 LASLCSEAAMQQIREK 446
Score = 94.7 bits (225), Expect = 8e-21
Identities = 51/148 (34%), Positives = 87/148 (58%)
Frame = -2
Query: 532 APSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIETL 353
AP +VF+D +D++ R +++G R + +LL ++DG +S+ +V VI ATNR + +
Sbjct: 590 APCVVFLDELDSIAKAR-GASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQI 648
Query: 352 DPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKA 173
DPAL+RPGR+D+ I PLPDE+ + I +A+DV+L + + SGAD++
Sbjct: 649 DPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEF 708
Query: 172 ICTEAGLMALRERRMKVTNEDFKKSKES 89
+ A +A+++ ED K+ E+
Sbjct: 709 VVQRAVKLAIKDS----IEEDIKRENET 732
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 104 bits (249), Expect = 1e-23
Identities = 52/132 (39%), Positives = 83/132 (62%)
Frame = -2
Query: 532 APSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIETL 353
+PS++F D IDA+ R + NS R + LLN+LDG ++ +V V+ ATNR + +
Sbjct: 641 SPSVIFFDEIDALTANRGEDNSS-----DRVVAALLNELDGIEALRNVLVLAATNRPDMI 695
Query: 352 DPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKA 173
DPAL+RPGR+DR + P+ + +++I I +M A+DV+L + + SGA++ A
Sbjct: 696 DPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVA 755
Query: 172 ICTEAGLMALRE 137
+C EAGL+A+ E
Sbjct: 756 LCQEAGLIAMHE 767
Score = 87.8 bits (208), Expect = 9e-19
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Frame = -2
Query: 535 HAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIET 356
H PSI+FID IDA+ KR + S E R + LL LDG + G V VI ATNR +
Sbjct: 371 HQPSIIFIDEIDALAPKRTEDVSEAE---SRAVATLLTLLDGMANAGKVVVIAATNRPNS 427
Query: 355 LDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRM-TLADDVNLSELIMSKDDLSGADI 179
+D AL RPGR++++IE +PD+ + I + S + +D L +L GAD+
Sbjct: 428 IDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADL 487
Query: 178 KAICTEAGLMALR 140
A+ EA L A++
Sbjct: 488 AAVVREAALRAIK 500
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 103 bits (248), Expect = 1e-23
Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Frame = -2
Query: 538 EHAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXML-ELLNQLDGFDSRGDVKVIMATNRI 362
++AP I+FID IDA+G R G + + L +LL ++DGF S + V TNR
Sbjct: 386 KNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRP 445
Query: 361 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNL--SELIMSKDDLSG 188
+ LDPAL+RPGR DR+I PD + +IF +H + AD+++L L + +G
Sbjct: 446 DVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTG 505
Query: 187 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 86
ADI +C E L+A R +V F+++ E V
Sbjct: 506 ADIMNVCNEGALIAARSNSNEVQMVHFEQAIERV 539
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 102 bits (244), Expect = 4e-23
Identities = 60/156 (38%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Frame = -2
Query: 538 EHAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGD----VKVIMAT 371
+ APSI+FID +DA+G KR N+ +++ + +LL LDGF D V I AT
Sbjct: 357 KQAPSIIFIDELDAIGQKR---NARDAAHMRQTLNQLLVDLDGFSKNEDLAHPVVFIGAT 413
Query: 370 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLS 191
N E+LDPAL RPGR DR I PLPD + + I HT + L DV+LS + +
Sbjct: 414 NFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFA 473
Query: 190 GADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 83
GAD+ + +A + A + V+ D + SK+ +L
Sbjct: 474 GADLANLINQAAVYASKNLSTAVSMRDLEWSKDRIL 509
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 95.5 bits (227), Expect = 5e-21
Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Frame = -2
Query: 529 PSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIETLD 350
PSI+F D ID + R +S E+ + LL +DG D+RG V VI ATNR LD
Sbjct: 471 PSIIFFDEIDGLAPIR---SSKQEQTHSSIVSTLLALMDGLDTRGQVVVIGATNRPNDLD 527
Query: 349 PALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMT-LADDVNLSELIMSKDDLSGADIKA 173
PAL RPGR DR+ FPLP+++ + +I I++ + + L L S GAD+KA
Sbjct: 528 PALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESYLLHLAESTSGYGGADLKA 587
Query: 172 ICTEAGLMALR 140
+CTEA L A+R
Sbjct: 588 LCTEAALNAVR 598
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 95.1 bits (226), Expect = 6e-21
Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Frame = -2
Query: 529 PSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLE-LLNQLDGFDSRGDVKVIMATNRIETL 353
PSI+F D ID + R S + +I ++ LL +DG +SRG V +I ATNR + +
Sbjct: 365 PSIIFFDEIDGLAPVR----SSKQEQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAV 420
Query: 352 DPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKD-DLSGADIK 176
DPAL RPGR DR+ FPLPD +++I IHT L ++ K GAD++
Sbjct: 421 DPALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLR 480
Query: 175 AICTEAGLMALR 140
A+CTEA L +++
Sbjct: 481 ALCTEAALNSIK 492
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 88.2 bits (209), Expect = 7e-19
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Frame = -2
Query: 532 APSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIETL 353
+P ++F D +DA+ +R DS S R + LL +LDG R V VI ATNR + +
Sbjct: 585 SPCVIFFDELDAMVPRRDDSLSEAS---SRVVNTLLTELDGLSDRSGVYVIAATNRPDII 641
Query: 352 DPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSK--DDLSGADI 179
DPA++RPGR+D+ + LPD + I T + L ++VNL L + + SGAD+
Sbjct: 642 DPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADL 701
Query: 178 KAICTEAGLMALR 140
A+ EA + ALR
Sbjct: 702 AALVREAAVTALR 714
Score = 79.0 bits (186), Expect = 4e-16
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Frame = -2
Query: 532 APSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGD-VKVIMATNRIET 356
AP ++FID IDAV KR + ER I L +++L + G V VI ATNR ++
Sbjct: 267 APCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDS 326
Query: 355 LDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIK 176
LD AL R GR DR+I +P + + +I + L+ D + +L GAD+K
Sbjct: 327 LDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLK 386
Query: 175 AICTEAGLMALR 140
A+ AG++A++
Sbjct: 387 ALTAAAGIIAIK 398
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 87.0 bits (206), Expect = 2e-18
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 5/145 (3%)
Frame = -2
Query: 541 EEHAPSIVFIDGIDAVGTKRYDSNSGGEREI-QRXMLELLNQLDGFDSRGDVKVIMATNR 365
EE I+ D +DA+ KR +SGG+ + + + +LL ++DG D ++ VI TNR
Sbjct: 369 EESGLHIIIFDELDAICKKR--GSSGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNR 426
Query: 364 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMT----LADDVNLSELIMSKDD 197
+ +D AL+RPGR++ +E LPDE + +I IHTSRM L +DV++ EL +
Sbjct: 427 KDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKN 486
Query: 196 LSGADIKAICTEAGLMALRERRMKV 122
SGA+I + A A R +KV
Sbjct: 487 FSGAEIAGLIKSASSFAF-YRHIKV 510
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 75.4 bits (177), Expect = 5e-15
Identities = 43/141 (30%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Frame = -2
Query: 532 APSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGF--DSRGDVKVIMATNRIE 359
+P ++F D +D++ R +S+ G + R + +LL +LD D+ V VI ATNR +
Sbjct: 747 SPCVIFFDELDSIAPHRGNSSDSGN-VMDRVVSQLLAELDSISKDNNKYVFVIGATNRPD 805
Query: 358 TLDPALIRPGRIDRKIEFPL-PDEKTKRRIFTIHTSRMTLADDVNLSELIMS-KDDLSGA 185
LDP+L+RPGR D+ + + E++K + T L + ++L+E+ + + +GA
Sbjct: 806 LLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGA 865
Query: 184 DIKAICTEAGLMALRERRMKV 122
D+ A+C++A L A++ + ++
Sbjct: 866 DMYALCSDAVLSAIKRKTNEI 886
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 74.5 bits (175), Expect = 9e-15
Identities = 40/137 (29%), Positives = 76/137 (55%)
Frame = -2
Query: 529 PSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIETLD 350
P ++F D D+V +R ++G R + ++L Q+DG +S V ++ AT R + +D
Sbjct: 700 PCVLFFDEFDSVAPRRGQDSTG---VTDRVVNQILTQMDGAESLDGVYIVAATTRPDMID 756
Query: 349 PALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAI 170
PAL+RPGR+D+ I LP+E+ + + +R + + L +L D + AD+ ++
Sbjct: 757 PALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSL 816
Query: 169 CTEAGLMALRERRMKVT 119
+A L+A+ + +V+
Sbjct: 817 LYDAHLIAVHKLLKRVS 833
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 62.9 bits (146), Expect = 3e-11
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = -2
Query: 538 EHAPSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIE 359
E PSI+FID ID++ R + S R I+ L +N + G D G V V+ ATN
Sbjct: 219 EQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGV-GKDESG-VLVLGATNIPW 276
Query: 358 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRM-TLADDVNLSELIMSKDDLSGAD 182
TLD A+ R R +++I PLP+ + R+F ++ ++ + + EL D SG+D
Sbjct: 277 TLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSD 334
Query: 181 IKAICTEAGLMALR 140
I + +A + +R
Sbjct: 335 ISIVVRDAIMEPVR 348
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 55.6 bits (128), Expect = 4e-09
Identities = 37/131 (28%), Positives = 69/131 (52%)
Frame = -2
Query: 529 PSIVFIDGIDAVGTKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIETLD 350
P+I+FID ID +R ++ +I+ + + + L SR V V+ ATNR +D
Sbjct: 185 PTIIFIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGLLSGQSR--VLVLGATNRPADID 242
Query: 349 PALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAI 170
A+ R R+ + PLP+ + +R+I ++ ++ L + + + ++ + LSG+ IK +
Sbjct: 243 EAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEV 300
Query: 169 CTEAGLMALRE 137
C A + RE
Sbjct: 301 CRSALSVPRRE 311
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 52.0 bits (119), Expect = 5e-08
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = -2
Query: 430 LLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFT-IHTS 254
LLN LDG S + + M TN E LDPAL+RPGR+D K + R +FT +
Sbjct: 327 LLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREMFTRFYGH 386
Query: 253 RMTLADDVNLSELIMSKD 200
+ADD LS+++ K+
Sbjct: 387 SPEMADD--LSDIVCPKN 402
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 44.8 bits (101), Expect = 8e-06
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Frame = -2
Query: 526 SIVFIDGIDAVGTKRYDSNSGGEREIQRXM-LELLNQLDGFDSRGDVK---------VIM 377
S++F+D ID++ + R DS G E E R + E L Q + K V+
Sbjct: 473 SVIFVDEIDSILSARNDS--GNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLA 530
Query: 376 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFT--IHTSRMTLADDVNLSELIMSK 203
ATN +D A R R ++ PLP+++T+ + + +H L ++ +L EL+
Sbjct: 531 ATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEE-DLEELVNLT 587
Query: 202 DDLSGADIKAICTEAGLMALR 140
+ SG+DI A+ +A + LR
Sbjct: 588 EGYSGSDITALAKDAAMGPLR 608
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 42.7 bits (96), Expect = 3e-05
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Frame = -2
Query: 532 APSIVFIDGIDAVGTKRYDSNSGGEREIQRXM-LELLNQLDGFD----SRGD-----VKV 383
+PSI+F+D ID++ + R S+ G E E R + E L Q SR V V
Sbjct: 551 SPSIIFVDEIDSLLSAR--SSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLV 608
Query: 382 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR----RIFTIHTSRMTLADDVNLSEL 215
+ ATN +D A R R R+ PLPDE T+R + ++L D + +
Sbjct: 609 LAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLED---IEAI 663
Query: 214 IMSKDDLSGADIKAICTEAGLMALR 140
+ + + SG+D+ A+ +A + LR
Sbjct: 664 VKATEYYSGSDLTALAKDAAMGPLR 688
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -2
Query: 289 KTKRRIFTIHTSRMTLADDVNLSELIMSKDDLSGADIKAICTEAGLMALRERRMKVTNED 110
KT I HT+R + + ++ I+ DD S DI +EA ALRE+ + +
Sbjct: 890 KTNETIID-HTTRKKKENHLRSAKYIVDSDDDSETDIAFFQSEA---ALREKNAQKASAL 945
Query: 109 FKK 101
FK+
Sbjct: 946 FKR 948
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 101 FLEVLICYFHTALSKCHETSFSTYCLNISTRKIIF*HNKFRQV 229
FL + +H + KC ETS +C+ + R HN+ R++
Sbjct: 268 FLHIFELRYHIMIKKCLETS-KRFCIAMPLRARSDGHNEHREL 309
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 241 LMSFLMYEW*KSFSWFSRQARG 306
L+SFL+Y+ K+F W Q G
Sbjct: 172 LLSFLVYKMNKAFGWIMYQQHG 193
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 25.4 bits (53), Expect = 5.5
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -2
Query: 220 ELIMSKDDLSGADIKAICTEAGLMALRER----RMKVTNEDFKKSKESVLYRKKEGTPEG 53
+L + + + K+ E+ L L E R+K NED +K++ L RK E E
Sbjct: 35 QLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEE 94
Query: 52 L 50
L
Sbjct: 95 L 95
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -2
Query: 154 LMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL*MYSIMFN 20
L +L RR+ +TN K ++ K+ P + +YS+ N
Sbjct: 1673 LASLHNRRIHITNVSSKDDLNLIVLAKQRSLPVTFDVSVYSLFLN 1717
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 490 TKRYDSNSGGEREIQRXMLELLNQLDGFDSRGDVKVIMATNRIET 356
+K+Y NS + M +L FD D K TNR ET
Sbjct: 574 SKKYQDNSVNNTYFDKVMQHVLVHSPAFDDSSDPK--FETNRSET 616
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 427 LNQLDGFDSRGDVKVIMATNRIETLDPALIRP 332
L QLDGFD + D + +DP +RP
Sbjct: 84 LLQLDGFDKKADQLYTQGLRMVHKMDP--LRP 113
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 7.2
Identities = 36/122 (29%), Positives = 48/122 (39%)
Frame = +3
Query: 51 SPSGVPSFLRYRTLSFDFLKSSFVTFIRRSLSAMRPASVHIALISAPERSSFDIISSDKF 230
S S PS + RT S F+ SS T P+S + S+P SS SS K
Sbjct: 129 STSIAPSMIGTRTSSSYFITSSSST----------PSSSSSSSSSSPSSSSSKSSSSSKS 178
Query: 231 TSSANVILDV*MVKILLLVFSSGKGNSIFLSIRPGRISAGSKVSIRFVAMITFTSPLESK 410
+SS++ SS +S S P + SK S + IT T+P S
Sbjct: 179 SSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSS--SFITSTTPASSS 236
Query: 411 PS 416
S
Sbjct: 237 SS 238
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 220 QTSSHHQLMSFLMYEW*KSFSWFSRQA 300
Q + HH+LMSFL ++ S F R A
Sbjct: 55 QENVHHRLMSFLNFDKEYSVPEFERDA 81
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 343 LIRPGRIDRKIEFPLP-DEKTKRRI 272
L+ R ++ +EFP+P E+ +RRI
Sbjct: 178 LVSAKRFNKSVEFPMPLKERQRRRI 202
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 496 VGTKRYDSNSGGEREIQRXMLELL 425
+ T +YDSNS E+++ M LL
Sbjct: 180 IPTPKYDSNSPAGHELRKRMTHLL 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,971
Number of Sequences: 5004
Number of extensions: 43796
Number of successful extensions: 146
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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