Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1454
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   0.79 
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   4.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.7  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 17   QTILPISSRSRSYLKVGPEVIQYC*HGDFDIMFRDEW 127
            Q  + IS R    LK   E++  C H DFD +   EW
Sbjct: 1454 QNTVSISERRELQLKTAKEILSNCKHLDFDYV-NGEW 1489


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -2

Query: 392 CKEYFSYFFYTLGYIIGVLV-RTPNFFQN--RLYRAY 291
           C++ +S+F+Y   + +G+ + R+ N++ N  +L+  Y
Sbjct: 156 CEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEKLFEDY 192


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 331  GPLIFFKTDYIEPMSLGN 278
            G LIF+K+D+++P +  N
Sbjct: 1078 GKLIFYKSDHLDPNACSN 1095


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,156
Number of Sequences: 5004
Number of extensions: 38617
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)