Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1454
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0110 - 865605-866004,866094-866712,867659-867863                 30   1.4  
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363...    28   5.6  

>03_01_0110 - 865605-866004,866094-866712,867659-867863
          Length = 407

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 448 QSRSTLFYSIINSFRRARDVKNILVIFFTPWVTLLEF**GPLIF 317
           ++  T+F+S+I S+R AR + + L     P   LLE    PL+F
Sbjct: 5   RTTKTVFFSLIESYRSARHLPSKLSQTIEPQCLLLEACGSPLLF 48


>03_06_0658 -
           35335639-35335731,35335814-35335871,35336213-35336355,
           35336624-35336703,35336916-35337075,35337531-35337668,
           35338487-35338567,35338640-35338693,35339192-35339297,
           35339615-35339682,35340076-35340225,35340401-35340519,
           35341151-35341362,35342118-35342205,35342365-35342479,
           35343083-35343274,35343809-35344018
          Length = 688

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 404 QGTRCKEYFSYFFYTLGYIIGVLVRTPNFFQNRLYRAYVTR 282
           +GTR  +   +  YT    I ++V +P FF NRL  ++++R
Sbjct: 184 RGTRSSDEELFQIYTHSESIALVVDSPQFF-NRLAESFISR 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,414
Number of Sequences: 37544
Number of extensions: 201966
Number of successful extensions: 332
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)