Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1454
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-3|AAD32272.1|  347|Caenorhabditis elegans Serpentine re...    33   0.18 
AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical...    27   6.7  

>AF039710-3|AAD32272.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein100 protein.
          Length = 347

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 247 TNRFSSFVAYSIQTNKFFLFIILIIDENELHDLTGALIVTPFISKHNIKVSVSAVLYNLW 68
           T +  +  AY   T +FF F ILI++ +        +I  P    H++   V  V + +W
Sbjct: 177 TAKLQALQAYPCPTQEFFTFPILILNSDSTTSTFIVIIFMPIFIAHSVGHGVFHVTWTIW 236


>AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37A1B.13 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 253 NFTNRFSSFVAYSIQTNKFFLFIILIIDENEL 158
           +FT+  S+ + YS +  +FF +II +I  N+L
Sbjct: 61  SFTSHLSNILFYSERKMQFFKYIIFVIILNQL 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,359,533
Number of Sequences: 27780
Number of extensions: 207157
Number of successful extensions: 320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)