Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1453
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   4.7  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   4.7  

>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 233 NLDSIGSGCALFHP 274
           N+D++GS C+L+ P
Sbjct: 268 NIDNLGSNCSLYQP 281


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 36  WRPWTSQCLFSLHRTECR 89
           WR W++   FSLH  + R
Sbjct: 286 WREWSANSAFSLHPLQLR 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,705
Number of Sequences: 5004
Number of extensions: 25406
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)