Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1453
         (360 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    25   0.65 
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    24   2.0  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    22   8.0  

>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 246  IESRFKRRNCQPI 208
            +E RFKR+NC P+
Sbjct: 1861 LEERFKRKNCAPL 1873


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 265 VSSHQFSFHMNNNS 306
           VS HQ SF +NNNS
Sbjct: 41  VSPHQSSFMINNNS 54


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 45  WTSQCLFSLHRTECRS 92
           W S  LF +H+  CRS
Sbjct: 526 WKSCWLFPVHKKGCRS 541


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,424
Number of Sequences: 2352
Number of extensions: 6494
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 26654730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)