Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1453
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-43|AAM44392.2|  222|Caenorhabditis elegans Hypothetical...    29   0.74 
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    26   9.1  

>AC084197-43|AAM44392.2|  222|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.36 protein.
          Length = 222

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 44  MDITVSLLSSQNRVQVCLTVKIGRTLLPTPLNHFPYFSLPQ 166
           MDI+VS L+S+  + V L    G +   TP N   YF  P+
Sbjct: 49  MDISVSALNSEYHLSVELFNPSGSSTFKTPNNGKHYFKFPE 89


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 216 QPIVPDLLQFNSS*RNCCGNEK*G 145
           +PI+  L  F+SS   CCG +K G
Sbjct: 153 RPILEALYSFSSSGGGCCGGKKAG 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,804,123
Number of Sequences: 27780
Number of extensions: 145955
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)