Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1453
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   1.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   1.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   3.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   3.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   4.4  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 221 IASPLCLTYCSLTVPSVIVVVMRNK-GNDL 135
           I S LC+ YC+L     + ++   K G DL
Sbjct: 5   IVSLLCVIYCALVHADTVAILCSQKAGFDL 34


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 221 IASPLCLTYCSLTVPSVIVVVMRNK-GNDL 135
           I S LC+ YC+L     + ++   K G DL
Sbjct: 5   IVSLLCVIYCALVHADTVAILCSQKAGFDL 34


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 87  CTLFCEERRDTVMSMVSNARLVVTLSKSP 1
           C  FC+ R +T+      ++L +   +SP
Sbjct: 78  CKCFCKRRTNTLRRGSDGSQLAMRNDRSP 106


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 221 IASPLCLTYCSLTVPSVIVVVMR 153
           + S  CL+   LTV + +V+V R
Sbjct: 701 VPSKFCLSVTLLTVATSLVIVSR 723


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 87  CTLFCEERRDTVMSMVSNARLVVTLSKSP 1
           C  FC+ R +T+      ++L +   +SP
Sbjct: 526 CKCFCKRRTNTLRRGSDGSQLAMRNDRSP 554


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 153 SHYHNNYARNC 185
           ++Y+NNY  NC
Sbjct: 341 NNYNNNYNNNC 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,478
Number of Sequences: 438
Number of extensions: 2014
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)