Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1452
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   1.7  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    26   6.8  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   6.8  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 1   FCFWYSFRLLVLVWQLTPSSKRCWL 75
           FC+W +  LLV +W + P S+R ++
Sbjct: 167 FCYWGNILLLVYIW-IFPESRRLFI 190


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  FSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQV 119
           FS+AC C+A+ +    M   + W +V    K+++
Sbjct: 194 FSLACGCIAMAARVIGMKLPKDWYRVFDTTKEEI 227


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
 Frame = -1

Query: 340 ANNSVKLKKS-----PIPPQSLNA*SIVSFN 263
           AN+S+  K+S     P+PPQS N+   +SF+
Sbjct: 389 ANDSLNAKQSSGKLGPLPPQSFNSSDYISFD 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,885
Number of Sequences: 5004
Number of extensions: 61586
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)