Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1452
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960     29   4.1  
06_01_1076 - 8778210-8778734                                           29   4.1  
10_02_0088 - 5121626-5122120,5122149-5122169                           28   9.4  

>10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960
          Length = 721

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 264 LKETIDYAFKLCGGIGLFFSFTELFAVWLARRY 362
           L + + YA  L  G G FF+    F VWL +RY
Sbjct: 38  LTQAVGYAVVL--GFGAFFALFTSFLVWLEKRY 68


>06_01_1076 - 8778210-8778734
          Length = 174

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 346 HTANNSVKLKKSPIPPQSLNA*SIVSFNFSMQGSHWQFVVLMPLQHIA 203
           HT N     +    P  S++A + VSF+    G H +FV L    H+A
Sbjct: 6   HTGNQQATQQGKAGPGNSVHAGNEVSFSILTHGIHLKFVRLYHRHHLA 53


>10_02_0088 - 5121626-5122120,5122149-5122169
          Length = 171

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 123 LVLAASHPYQLYSIPVEP 70
           L LA SH YQ+ S+P+ P
Sbjct: 131 LALALSHKYQIVSVPIRP 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,661,656
Number of Sequences: 37544
Number of extensions: 364059
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)