Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1452
         (766 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060360-1|AAL25399.1|  228|Drosophila melanogaster LD03691p pro...   175   7e-44
AF274020-1|AAF90146.1|  228|Drosophila melanogaster tetraspanin ...   175   7e-44
AE014297-4027|AAF56643.1|  228|Drosophila melanogaster CG6323-PA...   175   7e-44
AE014297-4028|AAN14096.1|  248|Drosophila melanogaster CG6323-PB...   155   6e-38
BT010223-1|AAQ23541.1|  235|Drosophila melanogaster RE72862p pro...    36   0.061
AE014134-3391|AAF53992.2|  245|Drosophila melanogaster CG8666-PA...    33   0.57 
AY102700-1|AAM27529.1|  227|Drosophila melanogaster SD10395p pro...    30   3.0  
AF220042-1|AAF23826.1|  227|Drosophila melanogaster tetraspanin ...    30   3.0  
AE013599-280|AAF59312.3|  227|Drosophila melanogaster CG12846-PA...    30   3.0  

>AY060360-1|AAL25399.1|  228|Drosophila melanogaster LD03691p
           protein.
          Length = 228

 Score =  175 bits (425), Expect = 7e-44
 Identities = 79/146 (54%), Positives = 106/146 (72%), Gaps = 4/146 (2%)
 Frame = +3

Query: 3   LFLVQFSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQVQERFQCCGFQDSTFTNTT--- 173
           LFL+QFSIA +CLAVNSEQQ+  A+QGW  V  D+++QVQ+  +CCGF  +  + T+   
Sbjct: 84  LFLIQFSIASSCLAVNSEQQQQFAEQGWMTVPTDLRKQVQDSLKCCGFNATAPSTTSVVP 143

Query: 174 -ADHPSCAVVNAICCKGINTTNCQCEPCMEKLKETIDYAFKLCGGIGLFFSFTELFAVWL 350
            ++ PSC ++N  CC   +  +C+CEPC   L++ IDYAFKLCGG+G+FFSFTE+ AV+L
Sbjct: 144 PSNEPSCELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSFTEVLAVFL 203

Query: 351 ARRYRNQPDPNYKEPHAIFPRKNYLY 428
           ARRYRNQ DP Y    A+FP  +YLY
Sbjct: 204 ARRYRNQHDPCYLPARAVFPH-DYLY 228


>AF274020-1|AAF90146.1|  228|Drosophila melanogaster tetraspanin 97E
           protein.
          Length = 228

 Score =  175 bits (425), Expect = 7e-44
 Identities = 79/146 (54%), Positives = 106/146 (72%), Gaps = 4/146 (2%)
 Frame = +3

Query: 3   LFLVQFSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQVQERFQCCGFQDSTFTNTT--- 173
           LFL+QFSIA +CLAVNSEQQ+  A+QGW  V  D+++QVQ+  +CCGF  +  + T+   
Sbjct: 84  LFLIQFSIASSCLAVNSEQQQQFAEQGWMTVPTDLRKQVQDSLKCCGFNATAPSTTSVVP 143

Query: 174 -ADHPSCAVVNAICCKGINTTNCQCEPCMEKLKETIDYAFKLCGGIGLFFSFTELFAVWL 350
            ++ PSC ++N  CC   +  +C+CEPC   L++ IDYAFKLCGG+G+FFSFTE+ AV+L
Sbjct: 144 PSNEPSCELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSFTEVLAVFL 203

Query: 351 ARRYRNQPDPNYKEPHAIFPRKNYLY 428
           ARRYRNQ DP Y    A+FP  +YLY
Sbjct: 204 ARRYRNQHDPCYLPARAVFPH-DYLY 228


>AE014297-4027|AAF56643.1|  228|Drosophila melanogaster CG6323-PA,
           isoform A protein.
          Length = 228

 Score =  175 bits (425), Expect = 7e-44
 Identities = 79/146 (54%), Positives = 106/146 (72%), Gaps = 4/146 (2%)
 Frame = +3

Query: 3   LFLVQFSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQVQERFQCCGFQDSTFTNTT--- 173
           LFL+QFSIA +CLAVNSEQQ+  A+QGW  V  D+++QVQ+  +CCGF  +  + T+   
Sbjct: 84  LFLIQFSIASSCLAVNSEQQQQFAEQGWMTVPTDLRKQVQDSLKCCGFNATAPSTTSVVP 143

Query: 174 -ADHPSCAVVNAICCKGINTTNCQCEPCMEKLKETIDYAFKLCGGIGLFFSFTELFAVWL 350
            ++ PSC ++N  CC   +  +C+CEPC   L++ IDYAFKLCGG+G+FFSFTE+ AV+L
Sbjct: 144 PSNEPSCELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSFTEVLAVFL 203

Query: 351 ARRYRNQPDPNYKEPHAIFPRKNYLY 428
           ARRYRNQ DP Y    A+FP  +YLY
Sbjct: 204 ARRYRNQHDPCYLPARAVFPH-DYLY 228


>AE014297-4028|AAN14096.1|  248|Drosophila melanogaster CG6323-PB,
           isoform B protein.
          Length = 248

 Score =  155 bits (376), Expect = 6e-38
 Identities = 81/167 (48%), Positives = 108/167 (64%), Gaps = 25/167 (14%)
 Frame = +3

Query: 3   LFLVQFSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQVQERFQCCGFQDSTFTNTT--- 173
           LFL+QFSIA +CLAVNSEQQ+  A+QGW  V  D+++QVQ+  +CCGF ++T  +TT   
Sbjct: 84  LFLIQFSIASSCLAVNSEQQQQFAEQGWMTVPTDLRKQVQDSLKCCGF-NATAPSTTSVV 142

Query: 174 --ADHPSCAVVNAICCKGINTTNCQCEPCMEKLKETIDYAFKLCGGIGLFFSFT------ 329
             ++ PSC ++N  CC   +  +C+CEPC   L++ IDYAFKLCGG+G+FFSFT      
Sbjct: 143 PPSNEPSCELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSFTEFAIAI 202

Query: 330 --------------ELFAVWLARRYRNQPDPNYKEPHAIFPRKNYLY 428
                         E+ AV+LARRYRNQ DP Y    A+FP  +YLY
Sbjct: 203 KRIRGACPALFSKLEVLAVFLARRYRNQHDPCYLPARAVFPH-DYLY 248


>BT010223-1|AAQ23541.1|  235|Drosophila melanogaster RE72862p
           protein.
          Length = 235

 Score = 35.9 bits (79), Expect = 0.061
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
 Frame = +3

Query: 117 VQERFQCCGFQ-----DSTFTNTTADHPSCAVVNAICCKGINTTNCQCEPCMEKLKETID 281
           +Q    CCG       ++ + N+T     C+V+N    K    T+     C++KL E +D
Sbjct: 138 LQTELDCCGINGPNDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHGCLQKLLEILD 197

Query: 282 YAFKLCG----GIGLFFSFTELFAVWLARRYRNQPD 377
               +      G+      T LFA  L R +R   D
Sbjct: 198 SKTLILASVVLGVAGIQMLTILFACCLYRSFRRSYD 233


>AE014134-3391|AAF53992.2|  245|Drosophila melanogaster CG8666-PA
           protein.
          Length = 245

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +3

Query: 117 VQERFQCCGFQ-----DSTFTNTTADHPSCAVVNAICCKGINTTNCQCEPCMEKLKETID 281
           +Q    CCG       ++ + N+T     C+V+N    K    T+     C++KL E +D
Sbjct: 138 LQTELDCCGINGPNDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHGCLQKLLEILD 197


>AY102700-1|AAM27529.1|  227|Drosophila melanogaster SD10395p
           protein.
          Length = 227

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
 Frame = +3

Query: 63  EMLAQQGWN--KVDMDVKQQVQERFQCC---GFQD--STFTNTTADHPSCAVVNAICCKG 221
           E + Q  W+  K D  +   +Q  F+CC   GF D   T+  +  D PS    N  C   
Sbjct: 115 EKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADYGITYPASCCDSPS----NGTCALT 170

Query: 222 INTTNCQCEPCMEKLKETIDYAFKLCG-GIGLFFSFTELFAVWLARRYRN-QPDPNY 386
              T   C   ++   +T     K  G G+        +FA  LA + RN Q   NY
Sbjct: 171 QVMTRSSCLKAVDSFWDTNVSIIKYAGLGVTAVELVAFIFACCLANQTRNSQRRQNY 227


>AF220042-1|AAF23826.1|  227|Drosophila melanogaster tetraspanin
           protein.
          Length = 227

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
 Frame = +3

Query: 63  EMLAQQGWN--KVDMDVKQQVQERFQCC---GFQD--STFTNTTADHPSCAVVNAICCKG 221
           E + Q  W+  K D  +   +Q  F+CC   GF D   T+  +  D PS    N  C   
Sbjct: 115 EKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADYGITYPASCCDSPS----NGTCALT 170

Query: 222 INTTNCQCEPCMEKLKETIDYAFKLCG-GIGLFFSFTELFAVWLARRYRN-QPDPNY 386
              T   C   ++   +T     K  G G+        +FA  LA + RN Q   NY
Sbjct: 171 QVMTRSSCLKAVDSFWDTNVSIIKYAGLGVTAVELVAFIFACCLANQTRNSQRRQNY 227


>AE013599-280|AAF59312.3|  227|Drosophila melanogaster CG12846-PA
           protein.
          Length = 227

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
 Frame = +3

Query: 63  EMLAQQGWN--KVDMDVKQQVQERFQCC---GFQD--STFTNTTADHPSCAVVNAICCKG 221
           E + Q  W+  K D  +   +Q  F+CC   GF D   T+  +  D PS    N  C   
Sbjct: 115 EKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADYGITYPASCCDSPS----NGTCALT 170

Query: 222 INTTNCQCEPCMEKLKETIDYAFKLCG-GIGLFFSFTELFAVWLARRYRN-QPDPNY 386
              T   C   ++   +T     K  G G+        +FA  LA + RN Q   NY
Sbjct: 171 QVMTRSSCLKAVDSFWDTNVSIIKYAGLGVTAVELVAFIFACCLANQTRNSQRRQNY 227


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,256,377
Number of Sequences: 53049
Number of extensions: 655024
Number of successful extensions: 1842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1838
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)