Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1452
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    31   1.2  
Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF099925-9|AAC69500.1|  150|Caenorhabditis elegans Hypothetical ...    29   4.8  
U58742-4|AAB36856.1|  242|Caenorhabditis elegans Activated in bl...    28   6.3  

>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 123 ERFQCCGFQDSTFTNTTADHPSCAVVNAICCKGINTTNCQC 245
           +R  C G  +   T  TA  PSC   N +C K      CQC
Sbjct: 33  QRLPCRGRNEEYKTCGTACEPSCTNPNPMCTKQCINNVCQC 73


>Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical
           protein F54F7.6 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 544 YVSLVVSRKLHLL*KHVIYILLKRTQF 624
           YVS+V+SR LH   +H+I + L R +F
Sbjct: 13  YVSIVISRDLHNNVEHIICVPLSRKRF 39


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 3   LFLVQFSIACACLAVNSEQQEMLAQQGWNKVDMDVKQQVQE---RFQCCGFQDSTFTNTT 173
           LFL++ +I    L      +  + +  ++  +M+ +  +     R+ CCG ++    N  
Sbjct: 110 LFLLEIAIGITVLVKRRSVRRTVKEYVFDSFNMNAQADISAFNFRYNCCGAENLPNLNCF 169

Query: 174 ADHPSCA 194
           A  P+C+
Sbjct: 170 AGQPTCS 176


>AF099925-9|AAC69500.1|  150|Caenorhabditis elegans Hypothetical
           protein K01A2.9 protein.
          Length = 150

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 274 VSFNFSMQG-SHWQ-FVVLMPLQHIALTTAHDG*SAVVFVNVESWKPQHWKRSCTCCFTS 101
           + FN  M+  SH + F  + PL HIAL+TA+   + +V   +  WK        + C T+
Sbjct: 76  IIFNNEMKSDSHARRFFHIWPLVHIALSTAYQLFTQIV---ISHWKTYQIPILYSSCATT 132

Query: 100 ISTLFH 83
           +S   H
Sbjct: 133 VSVGIH 138


>U58742-4|AAB36856.1|  242|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 3 protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 436 KKTCLNSLILCSQICLIRCQMNITPQIQQ 522
           + TC  S  +C Q C  +CQ    P  QQ
Sbjct: 88  QNTCQQSAPVCQQQCAPQCQQQFAPACQQ 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,852
Number of Sequences: 27780
Number of extensions: 352336
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)