Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1452
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    38   1e-04
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.4  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   7.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 23/100 (23%), Positives = 41/100 (41%)
 Frame = +3

Query: 45  VNSEQQEMLAQQGWNKVDMDVKQQVQERFQCCGFQDSTFTNTTADHPSCAVVNAICCKGI 224
           ++ + QE+      N    D    +Q+  QCCG    +  N      SC   N+      
Sbjct: 115 ISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC--NSPENNTC 172

Query: 225 NTTNCQCEPCMEKLKETIDYAFKLCGGIGLFFSFTELFAV 344
           + +N     C+E LK+T+  A  + G + +  +  EL  +
Sbjct: 173 SISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGI 212


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 509 HRYNNEALLFSYMLA*SLVGNC 574
           H +   A+++S +L  SLVGNC
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNC 76


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 509 HRYNNEALLFSYMLA*SLVGNC 574
           H +   A+++S +L  SLVGNC
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNC 76


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 114 QVQERFQCCGFQDSTFTNTTADHPSCAVVNAICCKGI 224
           + +  F C    ++   + T DHPS A +     KGI
Sbjct: 188 EAEAEFVCIATPEAIELHFTTDHPSVAYLLVGSLKGI 224


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 240 QCEPCMEKLKETID 281
           +C PC EK K+  D
Sbjct: 74  ECSPCSEKQKKIAD 87


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 240 QCEPCMEKLKETID 281
           +C PC EK K+  D
Sbjct: 74  ECSPCSEKQKKIAD 87


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 329 CEAEEKSNTTTKFK 288
           CE +EKSN   KF+
Sbjct: 108 CENKEKSNVCLKFE 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,527
Number of Sequences: 438
Number of extensions: 4587
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)