Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1449
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 33 0.033
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 29 0.54
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 2.2
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 27 3.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.8
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 5.0
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 8.8
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.8
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 25 8.8
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 33.5 bits (73), Expect = 0.033
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +1
Query: 355 DNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETVVQGR 534
D GE F EN P ++ P+ + TT P QTP S + P+ + V Q
Sbjct: 78 DGGE-AFFVFATENAVPRELQTSPIVSPTTSPKQTP---SINVTEPQDL--ELDKVSQDH 131
Query: 535 DKICKGTLIFSDEFEKNSLKDL 600
+K T + D +E +DL
Sbjct: 132 EKDQSNTYLMEDGYEFPLTRDL 153
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +1
Query: 424 PVATSTTGPLQTPQQASTPIVRPEQTCQTSETVVQGRDKICKGTLI 561
PV S T P P +STP+ QT T V K K LI
Sbjct: 580 PVTASETSPPHAPAVSSTPVTSAPPVSQTKVTKVSVPKKTSKKFLI 625
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 416 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLITYVQK 312
ATS PFSL+ V P S ++ +PS Q+
Sbjct: 152 ATSANNPFSLSTDVNPSKPSSNVFSKPSFAAKAQQ 186
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 388 NENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSET 519
N NP + A P +S + L T Q A +PI+ T + T
Sbjct: 142 NVQSNPNNTAPFPSYSSNSLQLPTNQTADSPIINDHSTANVTST 185
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +1
Query: 370 TVTEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQTCQTSETVV 525
T T + N +P+ + TST+ P STPI TS T +
Sbjct: 210 TSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSI 261
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = +1
Query: 370 TVTEFVNENGNPVDVANPPVATST----TGPLQTPQQASTPIVRPEQTCQTS 513
T T + N NP+ + TST TG + TP V P T TS
Sbjct: 153 TSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTS 204
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 415 ANPPVATSTTGPLQTPQQASTPIVRPEQTCQT 510
A+ ++ ++T P + AST IVRP QT
Sbjct: 257 ASGSISKNSTSPSKVKVNASTKIVRPVSAAQT 288
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 696 RPGIKADGPISCVDIEWIIRFF 631
+ G+K D PIS +I+ IRFF
Sbjct: 715 KQGMKYDSPISVKEIKPFIRFF 736
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 391 ENGNPVDVANPPVATSTTGPLQTPQ-QASTPIVRPEQTCQTS 513
EN PV +PPV T P+QT Q S + P + ++
Sbjct: 439 ENKPPVAQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSN 480
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.8
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = +1
Query: 526 QGRDKICKGTLIFSDEFEKNSLKDLT-SWG-AEVRFP------EEPDYPFNVYTTDGTIG 681
+GR CKG+ + +D F ++ L+ L S G +R+P PF V + G +
Sbjct: 43 KGRLYQCKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCAHSEAQPFYVNSPYGLVL 102
Query: 682 FDSGSLIISPVL 717
+G+LI P L
Sbjct: 103 GHNGNLINGPEL 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,544
Number of Sequences: 5004
Number of extensions: 70997
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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