Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1441
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    28   2.0  
12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076...    27   4.5  
12_02_0967 - 24916352-24916402,24916662-24916717,24917602-249176...    26   7.9  

>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 281 KRPLTRFFPFIIYGSTFRAHLFLLLRWVDQLIVHLVLS 168
           K  L RFF F  + S F   +FL+ RW+D+ +   +++
Sbjct: 40  KASLLRFF-FFFFLSLFVRSVFLIDRWIDENVAREIIN 76


>12_02_0781 +
           23105554-23106855,23107191-23107511,23107581-23107667,
           23107907-23108302,23108327-23108500,23108600-23108764,
           23108857-23109151,23109319-23109446,23109681-23109986,
           23110531-23110591,23110676-23110915,23111251-23111372
          Length = 1198

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 177 GLK*LLELIDIYNVIAPPTLRYKFKVSSIVTTAAPLSK 64
           GL+  + L+ +YN + P T+   F +   V   APL+K
Sbjct: 185 GLQLCIALMVLYNAVGPATVASVFVIVLTVMLNAPLAK 222


>12_02_0967 -
           24916352-24916402,24916662-24916717,24917602-24917685,
           24917751-24918251,24918520-24919207
          Length = 459

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 293 YKYRKRPLTRFFPFIIYGSTFRAHLFLLLRWVDQL 189
           Y+Y K PL + F + +Y + +    +   RW ++L
Sbjct: 212 YRYTKYPLRQMFYYELYEANYIVPAWARKRWSEEL 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,189,988
Number of Sequences: 37544
Number of extensions: 168763
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)