Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1441
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AF016444-4|AAN73879.1|  178|Caenorhabditis elegans Serpentine re...    27   5.3  
AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical ...    26   7.0  
AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    26   7.0  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical
           protein Y7A9C.7 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -1

Query: 347 TVIVNCSELII*CQAYSLYKYRKRPLTRFFPFIIYGSTFRAHLFLLLRWV 198
           T  +  S +   C  ++ +K++ +     FPF++YG    AH+F LL ++
Sbjct: 72  TYFIYLSFICFFCLTFT-HKHKGQYFNLAFPFLLYGLYTIAHVFSLLTFL 120


>AF016444-4|AAN73879.1|  178|Caenorhabditis elegans Serpentine
           receptor, class t protein72 protein.
          Length = 178

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 258 SVYYLWEYIQGSPFFI 211
           S +++W+++ GSP FI
Sbjct: 120 STHFIWQFVHGSPVFI 135


>AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical
           protein T11F8.2 protein.
          Length = 424

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = -1

Query: 293 YKYRKRPLTRFFPFIIYGSTFRAHLFLLLRWVDQLIVHLVLSDYW 159
           Y +++ P+T +F F +         FL +  ++ L  ++  +D W
Sbjct: 284 YNFQRSPMTTYFAFFVCNVLTALVYFLFIHEMEPLCRNMQCNDGW 328


>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 41  REAVMRFGLESGAAVVTILETLNLYLKVGGAITL 142
           R AV++FG+     +V I+ET+ ++L +G  + L
Sbjct: 136 RTAVVKFGMHFDKVMVAIIETM-VFLSLGEEVIL 168


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 254 FIIYGSTFRA--HLFLLLRWVDQLIVHLVLSDYW 159
           FI Y   FR    L+ L+ +V    VHL L D+W
Sbjct: 60  FIFYYRRFRRILPLYYLVIFVTLAAVHLYLGDFW 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,866,802
Number of Sequences: 27780
Number of extensions: 145670
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)