Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1439
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 29 0.58
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.77
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 1.0
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 28 1.8
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 1.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 28 1.8
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 28 1.8
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.3
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 5.4
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 7.1
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 9.4
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 25 9.4
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 29.5 bits (63), Expect = 0.58
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 360 SQGSLNTKISLHLPSNACGVRTSTLNTTEFEPDEEEQLYYNVEL 491
++G NT+ S+ N + TS+ T+ F DE+ Q NV+L
Sbjct: 627 TEGFENTQTSITTNDNQSSILTSSDQTSPFATDEDRQNSRNVQL 670
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.1 bits (62), Expect = 0.77
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 333 SKDFSTECQSQGSLNTKISLHLPSNACGVRTSTLNTTEFEPDEEEQLYYNVELVVQMDKH 512
+K+F+ Q +G L +H P+ A + FEP + QLYY ++LV + D
Sbjct: 937 AKEFNG-LQEEGDLGQIAFIH-PAAAMSFSDGSTTNLAFEPRDCLQLYYAMKLVSKGDFK 994
Query: 513 LQQSSDQE 536
+ + D +
Sbjct: 995 ISRKLDPD 1002
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 43 CAFKLSWATGNGI 5
C FKL+WATG GI
Sbjct: 158 CTFKLNWATGGGI 170
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 81 TDDLKILFFFNLCRTQRSMWNFSQLI*TSGCANMWRLVLLLCLAT 215
T L + FF L R RS WN I T G N+ V LC T
Sbjct: 193 THALSLPFFLFLLRPIRSQWNDLFAIHTKGFLNLPSGVWYLCFNT 237
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 493 SCKWTNTCNSHPTRRSWSNANCKDEQSKSTVP 588
S W NT N+H T+ S A+ DEQS P
Sbjct: 26 SINWKNTRNNHTTQAS-LQADNNDEQSNGQAP 56
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 429 TLNTTEFEPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKLQRRAVQIDSPALESVIN 608
+ N PD E Q + L QMD+ S +++ + ++A+ SP+L N
Sbjct: 110 SFNIKNSNPDSESQKDTDASLT-QMDQLSNTVSVKDLSINRNTNKKALNAVSPSLNLSSN 168
Query: 609 NKIREIA-GQEIKKSRMGRN 665
+ +++++ +E + RN
Sbjct: 169 SSVQDVSIDKEEMMKKQSRN 188
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 567 AVQIDSPALESVINNKIREIAGQEIKKSRMGRNRQGFASSAEMEQREMLMEAAR 728
AVQI+ ++ I K REI + ++ ++ R R+ E ++R+ MEA R
Sbjct: 22 AVQIEQ-LRKAQIREKAREITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKR 74
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +2
Query: 563 TSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAARNADGSGPGLD 736
T NR+S + + + GN R R +GS + A+R+ D S P +
Sbjct: 157 TPISNRKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNPSAE 214
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 551 QTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKI 649
QT K S N+Q K Q NK NSR + ++
Sbjct: 254 QTIKPSKQNKQKEEKKTISQGNKPNSRDEDSEL 286
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 507 KHLQQSSDQEILVKCKLQRRAVQIDSPALESVINN-KIREIAGQEIK 644
K + Q+S+ EILV C RA+ + P N K+ ++ G+ I+
Sbjct: 145 KKVVQNSNPEILVLCISALRAIDVLKPTKSLQNKNFKVAKLFGKHIR 191
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 384 ISLHLPSNACGVRTSTLNTTEFE---PDEEEQLYYNVELVVQMDKHLQQS 524
IS H ++ C V L+ TE + +EE +E ++ ++ HLQQS
Sbjct: 1227 ISAH--ASKCNVYAKALHYTELQFVQETKEEVSISTIESLITINNHLQQS 1274
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +2
Query: 185 AFGATAVFGDSKSRAAE*AQQGGERGYQVRQGFHLSGPGDGSPVQRISLQQR 340
AFG FG +S E + + L G P+Q+++ QQR
Sbjct: 57 AFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQR 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,018
Number of Sequences: 5004
Number of extensions: 73961
Number of successful extensions: 235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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