Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1439
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0031 + 11735431-11735728,11736704-11737041,11737150-117372... 34 0.15
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 31 1.1
05_03_0113 + 8526595-8527440,8527662-8528357 31 1.4
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 30 1.8
01_06_1045 - 34086936-34087029,34087093-34087406 29 4.3
03_02_0944 - 12603801-12604919 28 7.4
03_01_0335 - 2649566-2649570,2649713-2650787 28 7.4
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 28 9.8
>09_03_0031 +
11735431-11735728,11736704-11737041,11737150-11737285,
11737477-11737613,11737701-11737824,11738859-11739364
Length = 512
Score = 33.9 bits (74), Expect = 0.15
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +2
Query: 524 IRPGDLGQMQTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAA 703
+ P +LGQ ++S + R G C + +++ SR+ +GS SR R R G+
Sbjct: 3 VAPPELGQFDGWESSGEEERERWGWCRRSRSRSGSRS-----GSGSGSSR-RRLPRKGSG 56
Query: 704 RNADGSGPGLDGIVSGRCC 760
G G G D V+ CC
Sbjct: 57 ----GGGGGEDATVATGCC 71
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 509 TLATVIRPGDLGQMQTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGS 661
T T +P Q QT P +Q + + QQQ K N+ + + + NGS
Sbjct: 194 TTTTTAQPAVGQQAQTTNQQPPQQQQQQQQQQQQQQKPNTNDQVQSVPNGS 244
>05_03_0113 + 8526595-8527440,8527662-8528357
Length = 513
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 608 QQNKGNSRARNKKIQNGSKPSRFREFGRNGAARNADGSGPGLDGIVSGRCCH*TGHSRSG 787
Q++ GN + + + G +P R FG A R G PG G G C G +G
Sbjct: 55 QRDFGNLQQEYGRFRQGIRPRGSRSFG---ARRGGFGGRPGRSGFGGGACFSQGGDGPAG 111
Query: 788 T 790
T
Sbjct: 112 T 112
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 509 TLATVIRPGDLGQMQTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFG 688
+L I P LG+ +T +PN +R Q++ N R ++ K + G + + E
Sbjct: 1359 SLTAKIAPATLGERETFLPRAPNLDNRASALLQKE-FANLRGKSSKAKGGPRQAIDNE-- 1415
Query: 689 RNGAARNADG 718
NG AR+ G
Sbjct: 1416 SNGGARSLRG 1425
>01_06_1045 - 34086936-34087029,34087093-34087406
Length = 135
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 379 RRYHYISRRTRAVCEHPH*TPPNLNQTKKNNCII 480
R+YH I R R + + H P + T+ NC+I
Sbjct: 69 RKYHAIHGRNRLISDKYHMIPREYHATRGRNCMI 102
>03_02_0944 - 12603801-12604919
Length = 372
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 641 KKIQNGSKPSRFREFGRNGAARNADGSGPGLDGIVS 748
KK+++ +K R + +NG +GS PG G++S
Sbjct: 278 KKLEDVAKNLRLKFLKKNGGLLKMEGSKPGRKGVMS 313
>03_01_0335 - 2649566-2649570,2649713-2650787
Length = 359
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +3
Query: 480 NVELVVQMDKHLQQSSDQEILVKCKLQR----RAVQIDSPALESVINNKIREIAGQEIKK 647
N ++ K Q D+E+ ++ +L+ + +Q+D +I IRE E +
Sbjct: 195 NESAQAELVKLKQMEIDRELALRVQLEEQFKVKQIQLDKDVAGGMIEGGIREAQAGEGEN 254
Query: 648 SRMGRNRQGFASSAEMEQR 704
+ + ++G A + QR
Sbjct: 255 EKTKKTQEGMADKSGTSQR 273
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 596 KCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAARNA 712
+C N +SR + G++ SR R FGR G R +
Sbjct: 18 RCTGSTNAQHSRNAQANHRQGAQGSRRRRFGRGGRRRGS 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,723,635
Number of Sequences: 37544
Number of extensions: 528897
Number of successful extensions: 1691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1690
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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