Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1439
         (794 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    26   1.2  
U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles ...    25   2.7  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   2.7  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   2.7  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    25   2.7  
AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    24   6.2  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   6.2  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    23   8.2  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          23   8.2  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = +2

Query: 530 PGDLGQMQTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAARN 709
           PG  GQ  T K   P  +  VG    + +KG S  + +  +  S P    E  R      
Sbjct: 723 PGRHGQ--TVK-GEPGLKGNVGYSGDKGDKGYSGLKGEPGRCASIPPNLEEAIRGPQGLQ 779

Query: 710 ADGSGPGLDGI 742
            +   PG+ GI
Sbjct: 780 GEKGAPGIQGI 790


>U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S13 mRNA, complete
           cds. ).
          Length = 151

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 450 EPDEEEQLYYNVELVVQMDKHLQQS 524
           +PD  E LY+ ++  V + KHL+++
Sbjct: 81  KPDIPEDLYFLIKKAVSIRKHLERN 105


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 753 RPETIPSRPGPLPSAFRAAPFRP 685
           +P T+P+RP P  S  R    RP
Sbjct: 405 QPSTLPTRPSPKSSRKRRTGHRP 427


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/56 (21%), Positives = 29/56 (51%)
 Frame = -2

Query: 229 CPRLGVAKHSSSTKRHMLAHPLVQIN*EKFHIDLCVRHKLKKKRIFKSSVHCVYFP 62
           C R     ++S + RH+ +H L+  + + +  D C +   ++K++ K  ++  + P
Sbjct: 354 CYRCEYCPYASISMRHLESHLLLHTDQKPYKCDQCAQ-TFRQKQLLKRHMNYYHNP 408


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 545 QMQTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAARNA 712
           Q Q  +   P RQ+ VG   QQQ +   + ++++  N ++  R RE  RN   R A
Sbjct: 73  QQQQQQQRQPQRQAVVG--TQQQQQRRQQQQHQQRSNATQAQR-REQLRNEQRRPA 125


>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 315 TGDPSPGPLRWNPCRTW*PR--SPP 247
           T  PSPGP+ + P R   PR   PP
Sbjct: 439 TRAPSPGPIVYYPARETLPRLAQPP 463


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +3

Query: 456  DEEEQLYYNVELVVQMDKHLQQSSDQEI-LVKCKLQRRAVQIDSPAL---ESVINNKIRE 623
            +EE+     V   VQ ++   Q+    +  V+ ++ R    ID       +   N+K+++
Sbjct: 803  EEEQAKLDQVRRTVQQEEQTAQAKKDAMGAVEAEIARIQASIDKEQQARHDLQTNHKVKQ 862

Query: 624  IAGQEIKKSRMGRNRQGFASSAEMEQ 701
             A +   +S   R R   A SA +EQ
Sbjct: 863  QALKRSTESMEERKRTRVALSAALEQ 888


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 531 QEILVKCKLQRRAVQIDSPALESVINNKIREIAGQEIKKSR 653
           Q +LV  +  R+A Q+ +PA     N ++RE  G   K  R
Sbjct: 198 QVVLVDAEPGRKAGQVGAPASRLDGNVQVREAPGPGEKARR 238


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 782 FDCGRFSGSSGRRQFHPGPGRF 717
           F   R +   GRR F P PG+F
Sbjct: 157 FAPSRAASKQGRRLFGPTPGQF 178


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,805
Number of Sequences: 2352
Number of extensions: 19807
Number of successful extensions: 37
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)