Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1439
         (794 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M94362-1|AAA80979.1|  515|Homo sapiens lamin B2 protein.               34   0.51 
BT007441-1|AAP36109.1|  600|Homo sapiens lamin B1 protein.             34   0.51 
BC006551-1|AAH06551.1|  600|Homo sapiens lamin B2 protein.             34   0.51 
M68864-1|AAA36396.1|  298|Homo sapiens protein ( Human ORF mRNA,...    31   4.8  
BX538288-1|CAD98083.1|  535|Homo sapiens hypothetical protein pr...    30   8.4  
BC107132-1|AAI07133.1|  432|Homo sapiens hypothetical protein DK...    30   8.4  
BC107131-1|AAI07132.1|  248|Homo sapiens DKFZp779O175 protein pr...    30   8.4  

>M94362-1|AAA80979.1|  515|Homo sapiens lamin B2 protein.
          Length = 515

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 450 EPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKLQRR-AVQIDSPALESVINNKIREI 626
           E D   Q  Y+ ++   +++   Q  +Q  L K +L++    ++DS  L S  N+K    
Sbjct: 139 EVDSSRQQEYDFKMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASA 198

Query: 627 AGQEIKKSRM 656
           A +E+K++RM
Sbjct: 199 AREELKEARM 208


>BT007441-1|AAP36109.1|  600|Homo sapiens lamin B1 protein.
          Length = 600

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 450 EPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKLQRR-AVQIDSPALESVINNKIREI 626
           E D   Q  Y+ ++   +++   Q  +Q  L K +L++    ++DS  L S  N+K    
Sbjct: 223 EVDSSRQQEYDFKMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASA 282

Query: 627 AGQEIKKSRM 656
           A +E+K++RM
Sbjct: 283 AREELKEARM 292


>BC006551-1|AAH06551.1|  600|Homo sapiens lamin B2 protein.
          Length = 600

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 450 EPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKLQRR-AVQIDSPALESVINNKIREI 626
           E D   Q  Y+ ++   +++   Q  +Q  L K +L++    ++DS  L S  N+K    
Sbjct: 223 EVDSSRQQEYDFKMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASA 282

Query: 627 AGQEIKKSRM 656
           A +E+K++RM
Sbjct: 283 AREELKEARM 292


>M68864-1|AAA36396.1|  298|Homo sapiens protein ( Human ORF mRNA,
           complete cds. ).
          Length = 298

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 17/66 (25%), Positives = 36/66 (54%)
 Frame = +3

Query: 450 EPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKLQRRAVQIDSPALESVINNKIREIA 629
           E + +EQ    +ELV Q  +  ++  ++E L + + +RR  Q  S A + +  +++R  A
Sbjct: 88  EEERQEQTKRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAA 147

Query: 630 GQEIKK 647
            +E ++
Sbjct: 148 AEERRR 153


>BX538288-1|CAD98083.1|  535|Homo sapiens hypothetical protein
           protein.
          Length = 535

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 548 MQTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAARN 709
           +Q  +  +  +     +C +  NKG++  R+++I  G KP   +E G+   +R+
Sbjct: 471 IQHQRIHTDEKPYECNECGKAFNKGSNLTRHQRIHTGEKPYDCKECGKAFGSRS 524


>BC107132-1|AAI07133.1|  432|Homo sapiens hypothetical protein
           DKFZp779O175 protein.
          Length = 432

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 548 MQTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAARN 709
           +Q  +  +  +     +C +  NKG++  R+++I  G KP   +E G+   +R+
Sbjct: 368 IQHQRIHTDEKPYECNECGKAFNKGSNLTRHQRIHTGEKPYDCKECGKAFGSRS 421


>BC107131-1|AAI07132.1|  248|Homo sapiens DKFZp779O175 protein
           protein.
          Length = 248

 Score = 30.3 bits (65), Expect = 8.4
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 548 MQTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAARN 709
           +Q  +  +  +     +C +  NKG++  R+++I  G KP   +E G+   +R+
Sbjct: 184 IQHQRIHTDEKPYECNECGKAFNKGSNLTRHQRIHTGEKPYDCKECGKAFGSRS 237


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,263,518
Number of Sequences: 237096
Number of extensions: 2961355
Number of successful extensions: 8503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8500
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)