Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1439
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81088-1|CAB03124.1| 364|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical ... 47 2e-05
AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF106584-1|AAC78221.1| 360|Caenorhabditis elegans Hypothetical ... 36 0.025
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 34 0.10
AC024831-2|AAN63422.1| 502|Caenorhabditis elegans Hypothetical ... 32 0.54
AC024831-1|AAN63421.1| 500|Caenorhabditis elegans Hypothetical ... 32 0.54
Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical pr... 30 2.2
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 3.8
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho... 29 3.8
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho... 29 3.8
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh... 29 3.8
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p... 29 3.8
AF022982-4|AAB69938.1| 296|Caenorhabditis elegans Dnaj domain (... 29 5.1
Z82055-4|CAB04846.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 28 6.7
AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog ... 28 6.7
>Z81088-1|CAB03124.1| 364|Caenorhabditis elegans Hypothetical
protein F53F1.1 protein.
Length = 364
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +3
Query: 189 LVLLLCLATPSLGQQSKPNRVVS-VATKCDKGSILVDLEMDHPFKGLVFSKDFSTE--CQ 359
LVL L LAT ++ N + V +CD +I V ++ + PF G++F KDF++E C
Sbjct: 35 LVLQLLLATLAVNPVPIQNSLYGDVQVECDSRTISVQIKTEKPFVGVIFVKDFASEEVCT 94
Query: 360 SQGSLNTKISLHLPSNACG-VRTSTLN 437
S+G+ L + CG +R LN
Sbjct: 95 SRGTGRLSAFLEIEIGLCGALRQRVLN 121
>AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5a protein.
Length = 599
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +3
Query: 255 SVATKCDKGSILVDLEMDHPFKGLVFSKDF--STECQSQGSLNTKISLH-LPSNACGVRT 425
+V+ C I ++ D PF G ++S ++ S +C +++ L +PS CG T
Sbjct: 29 AVSAMCSSDGITASIDFDKPFTGKIYSLNYANSNDCLYYNNIDRDTVLFSIPSQLCG--T 86
Query: 426 STLNTTEFEPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKL 557
TT D+ E Y VQMDK Q S+D++ C+L
Sbjct: 87 KLQRTTRNMIDQMENRVY-----VQMDKDTQTSADKQFSFVCRL 125
>AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5b protein.
Length = 601
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Frame = +3
Query: 255 SVATKCDKGSILVDLEMDHPFKGLVFSKDF--STECQSQGSLNTKISLH-LPSNACGVRT 425
+V+ C I ++ D PF G ++S ++ S +C +++ L +PS CG +
Sbjct: 29 AVSAMCSSDGITASIDFDKPFTGKIYSLNYANSNDCLYYNNIDRDTVLFSIPSQLCGTKL 88
Query: 426 STLNTTEFEPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKL 557
D+ E Y VQMDK Q S+D++ C+L
Sbjct: 89 QRTTRNVSMIDQMENRVY-----VQMDKDTQTSADKQFSFVCRL 127
>AF106584-1|AAC78221.1| 360|Caenorhabditis elegans Hypothetical
protein F54A5.2 protein.
Length = 360
Score = 36.3 bits (80), Expect = 0.025
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +3
Query: 249 VVSVATKCDKGSILVDLEMDHPFKGLVFSKDFSTEC-QSQGSL--NTKISLHLPSNACGV 419
+V + CDK L+ ++ D F+G + S+ +C + G+L +TK L +P C
Sbjct: 23 IVDTSIACDKTDFLLKIKFDENFRGTIQSRAGHPKCIYANGTLQSDTKYQLKIPLTGCST 82
Query: 420 RTSTLNTTEFEPDEEEQLYYNVELVVQMDK 509
+ + E +E E + N E + DK
Sbjct: 83 KENGEGNLE---NEIEVVMANNEFNAETDK 109
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical protein
T23F1.5 protein.
Length = 1262
Score = 34.3 bits (75), Expect = 0.10
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Frame = +3
Query: 216 PSLGQQSKPNRVVSVAT-KCDKGSILVDLEMDHPFKGLVFSKDFST--ECQSQGSLNTKI 386
P G PNR++ C + I +++ P G VF+ D EC + K
Sbjct: 896 PPEGAPRVPNRLIGKPRILCLEDGISFEVKTILPLTGEVFANDRKRVLECHKSFTEEAKP 955
Query: 387 SLHLPSNACGVRTSTLNTTEFEPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKLQRR 566
+ LP + CGV+ N E + D Q Y++++V+ +D+ ++ Q + +C Q+
Sbjct: 956 KMFLPFSTCGVK----NVGE-QVDSRAQ--YHMQVVLIIDQGNGTNTLQSFMAQCVHQK- 1007
Query: 567 AVQIDSPALESVINNKIREI 626
V + L I + E+
Sbjct: 1008 -VNYNKQVLPKRIEEALEEL 1026
>AC024831-2|AAN63422.1| 502|Caenorhabditis elegans Hypothetical
protein Y55F3C.7b protein.
Length = 502
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 258 VATKCDKGSILVDLEMDHPFKGLVFSKDFSTE-CQSQG-SLNTKI-SLHLPSNACGVRTS 428
V C + + V + PF+GLV ++ +E C+ QG N + L+L S+ CG++
Sbjct: 29 VRWSCSEDVVSVFIRTSKPFEGLVQTRSSESEACRVQGFGTNVAVLKLNLKSDECGIKYD 88
Query: 429 TLNTT 443
+ T
Sbjct: 89 VASKT 93
>AC024831-1|AAN63421.1| 500|Caenorhabditis elegans Hypothetical
protein Y55F3C.7a protein.
Length = 500
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 258 VATKCDKGSILVDLEMDHPFKGLVFSKDFSTE-CQSQG-SLNTKI-SLHLPSNACGVRTS 428
V C + + V + PF+GLV ++ +E C+ QG N + L+L S+ CG++
Sbjct: 29 VRWSCSEDVVSVFIRTSKPFEGLVQTRSSESEACRVQGFGTNVAVLKLNLKSDECGIKYD 88
Query: 429 TLNTT 443
+ T
Sbjct: 89 VASKT 93
>Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical
protein M142.2 protein.
Length = 572
Score = 29.9 bits (64), Expect = 2.2
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Frame = +3
Query: 270 CDKGSILVDLEMDHPFKGLVFSKDF--STECQSQGSL---NTKISLHLPSNACGV-RTST 431
C I V PF+G VF D EC++ + I L +P +AC V R +
Sbjct: 234 CGPDRIGVKASTKQPFEGNVFVMDHYHDEECRAGPEKFPDSRSIGLTVPFSACNVHRYRS 293
Query: 432 LNTTEFEPDEEEQLYYNVELVVQMDKHLQQSSDQEILVKCKLQRRAVQIDSPALESVINN 611
LN + ++ V +V +DQ + V+C + P S+I
Sbjct: 294 LNP--------KGIFVEVSIVFMFHSLFMTKTDQTVKVQCFYMEADKHVTVPLSVSMITT 345
Query: 612 KIRE 623
RE
Sbjct: 346 VFRE 349
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 656 GSKPSR-FREFGRNGAARNADGSGPGLDGIVSGR 754
G+ PSR E RN +G GP +D I+SGR
Sbjct: 568 GTSPSRAVHEVPIRRVDRNYEGGGPSVDVIISGR 601
>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
6-phosphate synthaseprotein 1, isoform b protein.
Length = 1294
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 495 VQMDKHLQQSSDQEILVKCKLQRRAVQIDSPALESVINNKIREIAGQEIKKSRMGRNRQG 674
++ D L + + + C L V I ++ N I +EIKK MGR+ G
Sbjct: 561 IEYDSRLDRYTIEHDGWTCSLGVFPVSIKIADFVNIAKNPQTIIEAEEIKKQIMGRSADG 620
Query: 675 ---FASSAEMEQREMLMEAARAW 734
F S + + + E RAW
Sbjct: 621 GQLFFSVERFDYTKGISEKLRAW 643
>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
6-phosphate synthaseprotein 1, isoform a protein.
Length = 1331
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 495 VQMDKHLQQSSDQEILVKCKLQRRAVQIDSPALESVINNKIREIAGQEIKKSRMGRNRQG 674
++ D L + + + C L V I ++ N I +EIKK MGR+ G
Sbjct: 598 IEYDSRLDRYTIEHDGWTCSLGVFPVSIKIADFVNIAKNPQTIIEAEEIKKQIMGRSADG 657
Query: 675 ---FASSAEMEQREMLMEAARAW 734
F S + + + E RAW
Sbjct: 658 GQLFFSVERFDYTKGISEKLRAW 680
>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative
trehalose 6-phosphatesynthase protein.
Length = 1331
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 495 VQMDKHLQQSSDQEILVKCKLQRRAVQIDSPALESVINNKIREIAGQEIKKSRMGRNRQG 674
++ D L + + + C L V I ++ N I +EIKK MGR+ G
Sbjct: 598 IEYDSRLDRYTIEHDGWTCSLGVFPVSIKIADFVNIAKNPQTIIEAEEIKKQIMGRSADG 657
Query: 675 ---FASSAEMEQREMLMEAARAW 734
F S + + + E RAW
Sbjct: 658 GQLFFSVERFDYTKGISEKLRAW 680
>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
trehalose-6-phosphate synthase protein.
Length = 1331
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 495 VQMDKHLQQSSDQEILVKCKLQRRAVQIDSPALESVINNKIREIAGQEIKKSRMGRNRQG 674
++ D L + + + C L V I ++ N I +EIKK MGR+ G
Sbjct: 598 IEYDSRLDRYTIEHDGWTCSLGVFPVSIKIADFVNIAKNPQTIIEAEEIKKQIMGRSADG 657
Query: 675 ---FASSAEMEQREMLMEAARAW 734
F S + + + E RAW
Sbjct: 658 GQLFFSVERFDYTKGISEKLRAW 680
>AF022982-4|AAB69938.1| 296|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 22 protein.
Length = 296
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 575 NRQSRVGKCNQQQNKGNSRA---RNKKIQNGSKPSRFREFGRNGAARNADGSGP 727
NR+ R+ + +K + A R K I++ K R +EF NG R+ADGS P
Sbjct: 72 NREERIRMAQEHHSKRMAEADGKRKKLIEDLEK--REKEFS-NGGKRSADGSTP 122
>Z82055-4|CAB04846.1| 330|Caenorhabditis elegans Hypothetical
protein T26H2.4 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 327 VFSKDFSTECQSQGSLNTKISLHLPSNACGVRTSTLNTTEFEPDEEE 467
+ S + T C S SL+ + LH P++ +ST+ T+ E++
Sbjct: 196 IHSSAYPTFCSSFDSLDIRTPLHSPNDLLNFNSSTVTITDSRLTEKD 242
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
protein F09E8.3 protein.
Length = 1369
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 285 ILVDLEMDHPFKGLVFSKDFSTECQSQGSLNTKISLHLPSNACG 416
++ +E+ HP LV K F S G K S+ NACG
Sbjct: 601 VIEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACG 644
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 285 ILVDLEMDHPFKGLVFSKDFSTECQSQGSLNTKISLHLPSNACG 416
++ +E+ HP LV K F S G K S+ NACG
Sbjct: 601 VIEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACG 644
>AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog
protein.
Length = 933
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 285 ILVDLEMDHPFKGLVFSKDFSTECQSQGSLNTKISLHLPSNACG 416
++ +E+ HP LV K F S G K S+ NACG
Sbjct: 601 VIEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACG 644
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,807,545
Number of Sequences: 27780
Number of extensions: 439082
Number of successful extensions: 1281
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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