Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1439
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.050
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   1.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   5.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 786 PLRLWPVQWQQRPETIPSR 730
           P  LWP +W+ RP T+  R
Sbjct: 577 PRALWPTEWKVRPSTVEER 595


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 551 QTAKTSSPNRQSRVGKCNQQQNKGNSRARNKKIQNGSKPSRFREFGRNGAARN 709
           Q     + N+Q+   + + +QN GN +  NK+  N    +R  +  RNG  +N
Sbjct: 470 QNGNRQNDNKQNGNRQNDNKQN-GNRQNGNKQNDNKQNGNRQNDNKRNGNRQN 521


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 444 EFEPDEEEQLYYNVEL 491
           E++PD EEQ Y  VE+
Sbjct: 178 EYKPDVEEQRYKQVEI 193


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 445 NLNQTKKNNCIITWNWSCKWTNTCNSHPTRRSWS 546
           N+ Q  KN+ +++ N    + NT +++  R  WS
Sbjct: 361 NIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWS 394


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 445 NLNQTKKNNCIITWNWSCKWTNTCNSHPTRRSWS 546
           N+ Q  KN+ +++ N    + NT +++  R  WS
Sbjct: 399 NIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWS 432


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 496 CKWTNTCNSHPT 531
           C+  +TC+SHPT
Sbjct: 114 CRNFSTCSSHPT 125


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 496 CKWTNTCNSHPT 531
           C+  +TC+SHPT
Sbjct: 113 CRNFSTCSSHPT 124


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 517 NSHPTRRSWSNANCKDEQSKSTVP 588
           + HP RR+      K E  + T+P
Sbjct: 388 DKHPNRRARGQLRTKIESGEGTIP 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,023
Number of Sequences: 438
Number of extensions: 5139
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)