Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1438
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    30   1.4  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    30   1.4  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   5.6  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.6  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.6  
AC006695-7|AAM48553.1|  724|Caenorhabditis elegans Titin family ...    28   5.6  
AC006695-6|AAU45229.1|  703|Caenorhabditis elegans Titin family ...    28   5.6  
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ...    28   5.6  
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ...    28   5.6  
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ...    28   5.6  
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ...    28   5.6  
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ...    28   5.6  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 258 NALLLHGRNRRSGGTYPCG 202
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 258 NALLLHGRNRRSGGTYPCG 202
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393  RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
            R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 969  RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 1028

Query: 213  YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
              C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 1029 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 1069


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393  RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
            R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 969  RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 1028

Query: 213  YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
              C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 1029 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 1069


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393  RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
            R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 969  RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 1028

Query: 213  YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
              C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 1029 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 1069


>AC006695-7|AAM48553.1|  724|Caenorhabditis elegans Titin family
           protein 1, isoform a protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393 RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
           R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 564 RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 623

Query: 213 YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
             C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 624 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 664


>AC006695-6|AAU45229.1|  703|Caenorhabditis elegans Titin family
           protein 1, isoform b protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393 RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
           R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 543 RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 602

Query: 213 YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
             C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 603 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 643


>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform g protein.
          Length = 1769

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393  RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
            R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 969  RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 1028

Query: 213  YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
              C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 1029 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 1069


>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform f protein.
          Length = 1769

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393  RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
            R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 969  RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 1028

Query: 213  YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
              C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 1029 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 1069


>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform e protein.
          Length = 1769

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393  RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
            R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 969  RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 1028

Query: 213  YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
              C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 1029 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 1069


>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform d protein.
          Length = 1769

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393  RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
            R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 969  RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 1028

Query: 213  YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
              C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 1029 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 1069


>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform c protein.
          Length = 1769

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -3

Query: 393  RAHSPPGVKWLLEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGT 214
            R+ +P  V W  + +DIY       ++++    + + R P   +         +      
Sbjct: 969  RSVAPITVSWQKDGMDIYENEKYEVMQFADGAQILTIRAPTNLDSGVYTCTAESEHGVSN 1028

Query: 213  YPCGLTRGPTTSKSXPEYLEKIIIKKSELNVAQTNYPTNIDII 85
              C +     +++S PE  EK+ I   E  V +T    +I++I
Sbjct: 1029 SSCQVEL-TISAESSPESFEKVEITPPE-EVKETGIDDDIEVI 1069


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,677,149
Number of Sequences: 27780
Number of extensions: 242922
Number of successful extensions: 362
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)