Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1438
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    27   0.14 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.9  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 324 HTLRYSSKVSV*SQRLPHPSNRNALLLHGRNRRSGGTYPCGLTRGP 187
           H + Y    +  +QRLP   +R  ++L    +R GG  P G T GP
Sbjct: 363 HNVVYRPGENPVTQRLPAVLSRIGIILASPLKREGGP-PTGATTGP 407


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 267 SNRNALLLHGRNRRSGGTYPCGLT 196
           +  NA+LL GR+++S    P G T
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPT 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,529
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)