Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1437
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 163 2e-41
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 163 2e-41
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.1
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 2.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 2.5
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 3.2
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 3.2
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.3
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 5.7
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.9
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 9.9
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 163 bits (396), Expect = 2e-41
Identities = 79/121 (65%), Positives = 89/121 (73%)
Frame = +1
Query: 190 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 369
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 370 TGRVYNVTAHALGVIVNKRVRGRIIPKRINXRVEHVKHCKCRQDLLKRVKENERLLKEAK 549
TG VYNVT ++GV++ K V R + KR+N R+EHVKH KCRQD L RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 550 A 552
A
Sbjct: 121 A 121
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 163 bits (396), Expect = 2e-41
Identities = 79/121 (65%), Positives = 89/121 (73%)
Frame = +1
Query: 190 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 369
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 370 TGRVYNVTAHALGVIVNKRVRGRIIPKRINXRVEHVKHCKCRQDLLKRVKENERLLKEAK 549
TG VYNVT ++GV++ K V R + KR+N R+EHVKH KCRQD L RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 550 A 552
A
Sbjct: 121 A 121
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 302 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 186
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 483 VLHMLNTXIDAL--RYNPSANTLVDNHTESMS 394
V H+L+ D+L +YN S+ V NH E MS
Sbjct: 388 VAHLLDKLFDSLVLKYNTSSPKFVINHPEVMS 419
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 516 DSLKQVLSALAVLHMLNTXIDALRYNPSANTLVDNHTES 400
DS + SA D R N S N ++DNHT++
Sbjct: 9 DSRHSLSSAALSSASFENIYDPARKNESTNDVIDNHTDT 47
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 129 KLIHVL*NLSISYTSVYRLEDDELQGLPPRHQGLVRSQVPH 251
+L VL ++SI R DD + R G +R + PH
Sbjct: 603 ELFDVLSSISIQDCETDRANDDTILNNRVRRSGTIREEAPH 643
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 261 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 365
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 113 DVIFTKTAMVNTKRRLLSKLGIAKCEIKLLI 21
D I+ KT NT+RR+L L + K I LLI
Sbjct: 55 DEIYEKTPFNNTRRRIL-WLAVLKTVIPLLI 84
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.4 bits (53), Expect = 5.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 16 NPINNLISHLAIPNLLNSLRLVFTIAVFVNITSGN-FA*S*STCCE--TCRYHILRFTGS 186
N N+L L++ NLL+ +V + + N S S E +C+Y FT
Sbjct: 1367 NDANDLDVILSVCNLLSPFEVVCLLNRYQPCAGENPLPKSFSKAVEALSCKYKQSGFTNG 1426
Query: 187 KMTNSKGY 210
K+TN+ G+
Sbjct: 1427 KITNTNGH 1434
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -2
Query: 384 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 256
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 373 GRVYNVTAHALGVIVNKRVRGRIIPKRINXRVEH 474
G+ YN+T+H G VN + P + H
Sbjct: 234 GKTYNITSHVSGFYVNNCTSTKFDPSPCDDLQSH 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,151
Number of Sequences: 5004
Number of extensions: 41838
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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