Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1437
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 147 4e-36
10_08_0310 - 16669565-16669822,16670558-16670794 143 7e-35
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 32 0.35
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 31 0.62
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 31 0.82
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 30 1.1
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 29 1.9
01_01_0990 + 7847066-7847478,7847713-7848679 29 1.9
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 29 2.5
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 29 2.5
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 29 3.3
04_03_0661 - 18468244-18469580,18469610-18469619 29 3.3
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.3
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 28 4.4
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 28 4.4
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 28 4.4
08_02_0560 - 18677124-18677416,18678793-18678937 27 7.6
01_05_0421 + 21990034-21990392,21991691-21992681 27 7.6
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 147 bits (357), Expect = 4e-36
Identities = 69/121 (57%), Positives = 89/121 (73%)
Frame = +1
Query: 190 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 369
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 370 TGRVYNVTAHALGVIVNKRVRGRIIPKRINXRVEHVKHCKCRQDLLKRVKENERLLKEAK 549
TGRV+NVT A+GV +NK+V RII KRI+ RVEHV+ +C ++L R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 550 A 552
A
Sbjct: 121 A 121
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 143 bits (347), Expect = 7e-35
Identities = 67/121 (55%), Positives = 88/121 (72%)
Frame = +1
Query: 190 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 369
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 370 TGRVYNVTAHALGVIVNKRVRGRIIPKRINXRVEHVKHCKCRQDLLKRVKENERLLKEAK 549
TGRV+NVT A+GV +NK+V RII KRI+ RVEHV+ +C ++ R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 550 A 552
A
Sbjct: 121 A 121
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.9 bits (69), Expect = 0.35
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +3
Query: 315 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYXC*ACEAL 485
+++W C SK YA QS WK ++ RCDC SR+D H+ C A
Sbjct: 121 EKKWKCDKCSKKYAVQS-DWKAHTKTCGSREY-RCDCGTLFSRRDSFITHRAFCDALAEE 178
Query: 486 QVQTRLA*ESQRE*EATEGSQG 551
+ R A + + T S G
Sbjct: 179 SAKARAAPPPPADEDGTSASAG 200
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 31.1 bits (67), Expect = 0.62
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 315 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYXC 467
+++W C SK YA QS WK +++ C RCDC SRKD H+ C
Sbjct: 139 EKKWKCDRCSKKYAVQS-DWKAHTKI---CGTKEYRCDCGTIFSRKDSFITHRAFC 190
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 315 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYXC 467
+++W C SK YA QS WK S++ C RCDC SR+D H+ C
Sbjct: 117 EKKWKCDKCSKRYAVQS-DWKAHSKI---CGTREYRCDCGTLFSRRDSFITHRAFC 168
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +3
Query: 303 HCRH--QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQY 461
+CR +++W C SK YA QS WK S+ C RCDC SR+D H+
Sbjct: 115 YCRKHGEKKWRCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRA 170
Query: 462 XC 467
C
Sbjct: 171 FC 172
>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
Length = 764
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Frame = +3
Query: 270 LHVHESVQSWRHCRHQRQWCSSKGYAT------QSIPWKDRSRVQRDCSCSRCDCQQACS 431
LH H+ R C+ R S T K ++ CSCS+ D +CS
Sbjct: 232 LHTHQVTDENRQCKSARGMLSHLDNYTGLNSDHAGKKLKGHLSIEEPCSCSKDDTDSSCS 291
Query: 432 RKDYTEAHQY 461
D A Y
Sbjct: 292 LADEHHARHY 301
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 315 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYXC 467
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 98 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRAFC 149
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 297 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCS 398
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 315 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYXC 467
+++W C SK YA S WK S+V C RCDC SR+D H+ C
Sbjct: 148 EKKWKCDKCSKRYAVHS-DWKAHSKV---CGTREYRCDCGTLFSRRDSFITHRAFC 199
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 152 VSQHVDQLQAKFPD---VIFTKTAMVNTKRRLLSKLGIAKCEI 33
+ QH+ L+ KFP + T TA + K ++ LG+A C I
Sbjct: 1943 IHQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCII 1985
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 175 TEVYDIDKFHNTWINFK 125
T V ++DKF+N W NFK
Sbjct: 8 TPVEEVDKFYNFWYNFK 24
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 289 YKVGDIVDIRGNGAVQKGMPHKVY 360
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 297 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRD 392
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 330 SSKGYATQSIPWKDRSRVQRDC--SCSRCDCQQACSRKDYTE 449
+S G + Q P + R + Q D SC RC C+++ K Y E
Sbjct: 436 TSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKCLKLYCE 477
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 384 QRDCSCSRCDCQQACSRKDYTEAHQYXC 467
Q C C C C + RKD A +Y C
Sbjct: 391 QDTCGCMMCKCIYSDQRKDIVLADKYTC 418
>08_02_0560 - 18677124-18677416,18678793-18678937
Length = 145
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 71 RLLSKLGIAKCEIKLLIGFIFDF 3
RL S+ A CEI+ L F+F+F
Sbjct: 75 RLASRCFFASCEIRRLFNFVFNF 97
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 315 QRQW-CS--SKGYATQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYXC 467
+++W C SK YA S WK S++ C +CDC SR+D H+ C
Sbjct: 80 EKKWKCDKCSKKYAVHS-DWKAHSKI---CGTREYKCDCGTIFSRRDSFITHRAFC 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,664,230
Number of Sequences: 37544
Number of extensions: 281282
Number of successful extensions: 897
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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