Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1437
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   172   1e-43
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.10 
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    30   0.97 
Z81491-1|CAB04019.1|  181|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    28   5.2  
AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    27   9.1  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  172 bits (419), Expect = 1e-43
 Identities = 80/122 (65%), Positives = 93/122 (76%)
 Frame = +1

Query: 190 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 369
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 370 TGRVYNVTAHALGVIVNKRVRGRIIPKRINXRVEHVKHCKCRQDLLKRVKENERLLKEAK 549
           TGR++NVT  A+G+IVNKRVRG I+PKRIN R+EH+K  KCR D L RVK N+   K AK
Sbjct: 61  TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120

Query: 550 AA 555
           +A
Sbjct: 121 SA 122


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 374 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 237
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 374 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 237
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 374 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 237
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 291 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 428
           Q  RHC  Q   C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>Z81491-1|CAB04019.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.1 protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 348 TQSIPW--KDRSRVQRDCSCSRCDCQQACSRKDYTEA 452
           T+ + W   D+SR+  D  C++   ++ C  KD+ +A
Sbjct: 120 TECVQWYFSDKSRMSTDQKCAQFKAKKQCIEKDFGKA 156


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 162 SYTSVYRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHES 287
           +YTS+ R   D+L  LP R   L+R      WN  AL  H S
Sbjct: 289 NYTSIKRPPGDKLTLLPQRFGELIRK----LWNPRALRTHVS 326


>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 TCCETCRYHILRFTGSKMTNSKGY 210
           +C ETC   I  F   KM ++KGY
Sbjct: 452 SCGETCHASICLFKDKKMKSAKGY 475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,724,767
Number of Sequences: 27780
Number of extensions: 243528
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)