Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1435
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    31   0.19 
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    27   1.8  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    27   2.4  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   2.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   2.4  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    27   3.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   5.5  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    26   5.5  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   7.2  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   7.2  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   7.2  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    25   7.2  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    25   9.5  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 346 SLSKCPLSRLGSIMCWLT*VFLHSGPSCILLDSAICPM 459
           SLS+CP     ++ C L   + +S PS   +D + CP+
Sbjct: 612 SLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPL 649


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
 Frame = -3

Query: 551 HPSKYGEEAECNS--ALHVVRRS-DWRLLSFA 465
           HP++YGE+ + N+  ++ V+R S +W ++ FA
Sbjct: 42  HPNRYGEDFDPNAPKSVDVIRDSTEWGMIDFA 73


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 104 KSWRRV*PSGFYSKASCDRQGGM 172
           K WRR  P GFY+K      GG+
Sbjct: 14  KQWRRDHPFGFYAKPCKSSDGGL 36


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 655 GKPPGLPIAPSTS 617
           G+PP LPI+PSTS
Sbjct: 315 GQPPSLPISPSTS 327


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +3

Query: 423 FLYFVGFCYLSNAWGKTEKPPIGTANNMQGAIAFCFFSIFAWVACAFFAFQRFRMGADAA 602
           F + + F  L+       K  I T       +A+C  SI   +   FF     R+G    
Sbjct: 233 FFHQIAFTILNRVGEDNPKSVIATT-----ILAYCLSSILTGLV--FFILGILRLGRLIE 285

Query: 603 FAPAYEVEGAIGSPGGF 653
           F P + + G IG  G F
Sbjct: 286 FFPRHILLGCIGGVGSF 302


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 336 GEYLFEQMSSVKTRKHYVLADLGFSAFWAFLYFVG 440
           G Y   +  ++  R  Y L  +GF  FW   YF G
Sbjct: 111 GFYPLSETRTMHVRCRYRLLGVGFDNFWLVHYFQG 145


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 636 RSRPPLRMPERTPHQRPCGTVGKRRKRRPPK 544
           R RP L  P   P      ++ KR++ RPPK
Sbjct: 342 RGRPRLERPSGLPLDSKSQSLFKRKRGRPPK 372


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 510 PACCSPFRLAASQFCPKHWTNS 445
           P CC+   L+  QF  KHW +S
Sbjct: 326 PFCCTLLCLSPKQFFLKHWISS 347


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 453 TNSRIQQNTRRPRMQKNLSQPTHNAS 376
           + SR   N RR    KN + PTH+AS
Sbjct: 77  SRSRSSNNKRRTSFGKNGASPTHSAS 102


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 249 NGPSHQNQYASPWMICSPLQSR*TANIPP 163
           N PS+ N  ASP ++ +PLQ     ++PP
Sbjct: 125 NNPSYMNSQASPNIMNAPLQR--DTSVPP 151


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 238 PSESVRQPLDDMQPITITLNSQHTAL 161
           P E + +P+D ++P T TLN   T L
Sbjct: 333 PDEDIYKPVDKVEPGTRTLNISGTEL 358


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 24/122 (19%), Positives = 50/122 (40%)
 Frame = +3

Query: 174 WLFSVIVMGCISSKGWRTDSDGKDHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFE 353
           W FS++ +  ++S  +R   D  +   Y +  +   YG G+    +  S  + +  + + 
Sbjct: 16  WTFSILAVLRLTSASFRVIDDCDEVYNYWEPLHYLLYGYGLQTWEY--SPEYAIRSWFYI 73

Query: 354 QMSSVKTRKHYVLADLGFSAFWAFLYFVGFCYLSNAWGKTEKPPIGTANNMQGAIAFCFF 533
            + +V     ++   LG S    F +  G     +A+ +T    +  A N   A+A    
Sbjct: 74  ALHAV---PGFLARGLGLSRLHVFYFIRGVLACFSAFCETNL-ILAVARNFNRAVALHLT 129

Query: 534 SI 539
           S+
Sbjct: 130 SV 131


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 541 NMEKKQNAIAPCMLFAVPIGGFSVLPQALDK*QNPTKYKKA 419
           +++++QN I  C+LF   +  F    Q L++  +  +++KA
Sbjct: 86  SVDREQNRIKECLLFVRQVRDFKECLQDLNRAMHHQQWEKA 126


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 486 IGTANNMQGAIAFCFFSIFAWVACAFFAFQRFRMGADAAFAPAYEVEGA 632
           +  A + + A+A C  ++   VA +  A  R R+ A+   AP++  EGA
Sbjct: 721 VSAAASARMAVAECIMNL---VAASIPALDRIRLSANWMAAPSHPGEGA 766


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/34 (23%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 246 HCVYNDDTNACNY-GVGISVIAFIASVAFIVGEY 344
           +C+ ++ ++A N  G+ +S++  + ++AF++  Y
Sbjct: 180 YCIVHNKSSAANIVGIVLSIVVTLGTLAFLIVRY 213


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 646 PGLPIAPSTSYAGANAASAPMRNRW 572
           PG+ + P++SY  + +A  P    W
Sbjct: 304 PGMAVGPNSSYITSTSAGTPRYAAW 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,217
Number of Sequences: 5004
Number of extensions: 56682
Number of successful extensions: 186
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)