Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1435
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    29   0.030
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    29   0.030
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.9  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 377 PSLDRGHLLKEIFPDNKSHGGNECNDR 297
           P  + G  LK+I PD  S G N+CN++
Sbjct: 52  PCTNEGRELKKILPDALSTGCNKCNEK 78


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 377 PSLDRGHLLKEIFPDNKSHGGNECNDR 297
           P  + G  LK+I PD  S G N+CN++
Sbjct: 52  PCTNEGRELKKILPDALSTGCNKCNEK 78


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 77  GYFRCVWWWKSW 112
           GY+ C WW   W
Sbjct: 484 GYYPCCWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 77  GYFRCVWWWKSW 112
           GY+ C WW   W
Sbjct: 537 GYYPCCWWKICW 548


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 248  MVLPIRISTPALG*YAAHYNHAEQPTYRPDDHMRPLNKSLRVKRASSFSTTIRT--GSI 78
            ++ P  I TP+ G     +   EQ +   +++   +NK    KR +S +T+++   GSI
Sbjct: 843  VIYPPVIGTPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSI 901


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 161  DDHMRPLNKSLRVKRASSFSTTIRT 87
            +DH RPL++ +     S +ST  RT
Sbjct: 1324 EDHRRPLSEHIYSSIDSDYSTLERT 1348


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 601 AASAPMRN-RWKAKKAQATQANMEKKQNAIAPCMLFAVPI 485
           A +A  +N R +AKK         + QN  A C L  V +
Sbjct: 242 AVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAKVAL 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,065
Number of Sequences: 438
Number of extensions: 3960
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)