Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1433
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   4.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   6.0  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    24   7.9  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    24   7.9  

>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 260 LNTSGFLYGSDLTLLITISDGKSSTCNLTH 349
           LN  GF+ G DL  L+  +D K+    +TH
Sbjct: 156 LNFLGFIKGLDLLGLLDAADYKAIALYITH 185


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 180 PE*STSGIAEFTNSSFPKFTFTTYHPH*ILLASSTAAI*HC*SPSATVRVQRAT*P 347
           P  +TS  +   +S+    +F    P   L  SST  I +  +P+A   + R++ P
Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKP 351


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 199 ESLSSPTVAFQSSLLPRTTRTKYFWLPLRQRF 294
           ESL+ PT++FQ + +P+T     F  P RQ +
Sbjct: 195 ESLN-PTLSFQHNDVPQTDNFIPFLTPKRQAY 225


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 63  GAMVQRRRADHLEQFI 16
           GAMV   R DHLE  I
Sbjct: 313 GAMVSNNRFDHLESLI 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,818
Number of Sequences: 5004
Number of extensions: 30290
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)