Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1433
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 32 0.11
06_03_0404 - 20460555-20462135 28 1.8
11_01_0337 - 2519732-2521093 28 2.4
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 27 3.2
04_04_0011 - 22143905-22144174 27 3.2
02_05_0319 - 27872601-27874457 27 3.2
01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251 27 3.2
08_02_0358 + 16176373-16176534,16176628-16176739,16176967-161771... 27 5.6
07_03_1387 + 26202975-26203274,26203363-26203449,26203541-262036... 27 5.6
06_01_0734 + 5419951-5420475 27 5.6
10_07_0136 - 13315616-13316226,13316282-13316315 26 9.8
08_01_0129 + 1039364-1039672 26 9.8
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 32.3 bits (70), Expect = 0.11
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 80 VGRLAYSPPDGEWLPSPMDFSNARGRAKPLPLATGVEYIWNR*VHQQ*LSKVHFY-HVPP 256
V A DGEW P P+ +A + PL L TG ++W R LS + F V P
Sbjct: 512 VSAAAVEEEDGEWHPLPL---SAADLSLPLTLPTGQTFLWRR----TSLSPLRFTGAVGP 564
Query: 257 ALNTSGFLYGSD--LTLLITISDGKSST 334
L + L SD L L+ + G SS+
Sbjct: 565 HLVSLSHLPSSDGRLAFLLHNNGGSSSS 592
>06_03_0404 - 20460555-20462135
Length = 526
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 198 QMYSTPVARGSGLALPLALLKSMGDGNHSPSGGL 97
+MY +GLA P L ++G G H GG+
Sbjct: 155 EMYYAVAKADAGLAFPAGLCPTIGVGGHFSGGGI 188
>11_01_0337 - 2519732-2521093
Length = 453
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 250 YVVKVNFGKLLLVNSAIPDVLYSG 179
Y+V GKLLLV ++PD L+SG
Sbjct: 305 YLVASLAGKLLLVRWSLPDELFSG 328
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 198 QMYSTPVARGSGLALPLALLKSMGDGNHSPSGGL 97
++Y T GLA P + ++G G H GG+
Sbjct: 156 ELYYTVAKSNPGLAFPAGVCPTIGVGGHLSGGGI 189
>04_04_0011 - 22143905-22144174
Length = 89
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -2
Query: 171 GSGLALPLALLKSMGDGNHSPSGGLYASLPTKALKKGAMVQRRRADHLEQFITA 10
G G L +LL + D + GG A+ KA K A V+R RA ++ I A
Sbjct: 9 GGGRGLLTSLLAA--DADADSGGGRVAAAKAKAKAKAAAVERVRAARGDRLIAA 60
>02_05_0319 - 27872601-27874457
Length = 618
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 189 STPVARGSGLALPLALLKSMGDGNHSPSGGLYASLPTKALKKGAMVQR 46
S P++ S L ++ DGNH+ + L ++L A +G QR
Sbjct: 245 SPPISAASSRQLLSEAAAAVADGNHTAAASLLSALKLSANPRGDAEQR 292
>01_05_0742 - 24829151-24829307,24829894-24830136,24830175-24830251
Length = 158
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 111 PSGGLYASLPTKALKKGAMVQRRRAD 34
PS GL+ + P +A + G +QRRR +
Sbjct: 3 PSSGLWEAAPDEAARGGRRMQRRRRE 28
>08_02_0358 +
16176373-16176534,16176628-16176739,16176967-16177151,
16177325-16177330
Length = 154
Score = 26.6 bits (56), Expect = 5.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 68 FKAFVGRLAYSPPDGEWL 121
+KAF+ +L PP G WL
Sbjct: 66 YKAFISKLVKPPPAGTWL 83
>07_03_1387 +
26202975-26203274,26203363-26203449,26203541-26203648,
26203708-26203980,26205242-26205355,26205900-26206268
Length = 416
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 117 GYRRPWTSAMPGAEPSRCLLPP 182
G RPWT+A G RC + P
Sbjct: 17 GGHRPWTAASRGVSARRCSVAP 38
>06_01_0734 + 5419951-5420475
Length = 174
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 171 GSGLALPLALLKSMGDGNHSPSG 103
G GL LA L MGDG SP G
Sbjct: 108 GGGLMYLLAQLMGMGDGGGSPYG 130
>10_07_0136 - 13315616-13316226,13316282-13316315
Length = 214
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 209 LSDSRCTLLRWQEAAAWLCPWHC 141
L++ R T W E A W C HC
Sbjct: 187 LTEYRYTRRIWNEIAQWTCNDHC 209
>08_01_0129 + 1039364-1039672
Length = 102
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 68 FKAFVGRLAYSPPDGEW 118
F A +GRLA SPP W
Sbjct: 85 FSALLGRLASSPPPPSW 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,566
Number of Sequences: 37544
Number of extensions: 259177
Number of successful extensions: 656
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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