Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1433
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical p...    29   0.93 
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical p...    26   6.6  
U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81521-2|CAB04224.1|  514|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF076840-1|AAC95522.1|  514|Caenorhabditis elegans Rad17-like pr...    26   8.7  

>Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 196 LESLSSPTVAFQSSLLPRTTRTKYFWLPLRQRFDIADHHQRR 321
           +ES     + F SSL         FWLP   RFD+A  H  R
Sbjct: 231 MESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASGHPER 272


>Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 196 LESLSSPTVAFQSSLLPRTTRTKYFWLPLRQRFDIADHHQRR 321
           +ES     + F SSL         FWLP   RFD+A  H  R
Sbjct: 231 MESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASGHPER 272


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 198 QMYSTPVARGSGLALPLALLKSMGDGNHSPSGGLYASLPTKALKKG 61
           Q+Y T + R +  AL   +  S+ DG  S     YA L +K L  G
Sbjct: 545 QLYDTLLVRPTPYALQPKICTSVADGGGSKPSDDYADLISKPLNSG 590


>Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical protein
            ZK930.1 protein.
          Length = 1354

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 224  ATVGELSDSRCTLLRWQEAAAWLCPWHC*SPWATVTTHHQVDY 96
            A VG+ S    T +R  +A       HC  P A V THH V Y
Sbjct: 1046 ADVGQGSARVATQVRIPDAEGPPVYLHCNGPMAIVRTHHGVLY 1088


>U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical
           protein D2092.1a protein.
          Length = 804

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 269 KYLVRVVRGKSELWKATVGELSDSRCTLLRWQEAAAWLCPWH 144
           KY+ +  + K+ L+K   GEL +    L  ++    +L  WH
Sbjct: 580 KYMSQEQKFKASLFKTYFGELKEVVNVLASYKNQMEYLLSWH 621


>U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical
           protein D2092.1b protein.
          Length = 890

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 269 KYLVRVVRGKSELWKATVGELSDSRCTLLRWQEAAAWLCPWH 144
           KY+ +  + K+ L+K   GEL +    L  ++    +L  WH
Sbjct: 666 KYMSQEQKFKASLFKTYFGELKEVVNVLASYKNQMEYLLSWH 707


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 245  HVPPALNTS-GFLYGSDLTLLITISDGKSSTCNL 343
            H+  ALN   GFL+   L  L T+S+     CNL
Sbjct: 929  HIADALNQIVGFLHLKSLQNLYTMSNSSDEICNL 962


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 95  YSPPDGEWLPSPMDFSNARGRAKPLPL 175
           Y+P   +  P PMD+SN R  +   P+
Sbjct: 814 YNPSHSQCPPPPMDYSNNRRNSNLTPM 840


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 95  YSPPDGEWLPSPMDFSNARGRAKPLPL 175
           Y+P   +  P PMD+SN R  +   P+
Sbjct: 814 YNPSHSQCPPPPMDYSNNRRNSNLTPM 840


>Z81521-2|CAB04224.1|  514|Caenorhabditis elegans Hypothetical
           protein F32A11.2 protein.
          Length = 514

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 80  VGRLAYSPPDGEWLPSPMDFSNARGRAKPLP 172
           +GR+ Y+      +P P  FS  R ++ P+P
Sbjct: 261 IGRILYAKRVNPNVPKPSRFSKRRRKSAPIP 291


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 53  TMAPFFKAFVGRLAYSPPDGEWLPSPMDFSNARGRAKPLP 172
           T  P  + F   +  S P  E  PSPM F     + KP P
Sbjct: 9   TPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKP 48


>AF076840-1|AAC95522.1|  514|Caenorhabditis elegans Rad17-like
           protein protein.
          Length = 514

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 80  VGRLAYSPPDGEWLPSPMDFSNARGRAKPLP 172
           +GR+ Y+      +P P  FS  R ++ P+P
Sbjct: 261 IGRILYAKRVNPNVPKPSRFSKRRRKSAPIP 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,833,337
Number of Sequences: 27780
Number of extensions: 178115
Number of successful extensions: 472
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)