Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1433
         (355 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    20   9.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 101 PPDGEWLPSPMDFSNARG 154
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 89  LAYSPPDGEWLPSPMDFSNARG 154
           + Y P +  WLP  + ++NA G
Sbjct: 107 MLYVPSENIWLPDIVLYNNADG 128


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 56   WYKGEGRIILNNSSQ 12
            WYKG+G  I  +S++
Sbjct: 1345 WYKGQGEQIRTDSTR 1359


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 56   WYKGEGRIILNNSSQ 12
            WYKG+G  I  +S++
Sbjct: 1341 WYKGQGEQIRTDSTR 1355


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 95  YSPPDGEWLPSPMDFSNARG 154
           Y P +  WLP  + ++NA G
Sbjct: 96  YVPSEHIWLPDIVLYNNADG 115


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 65  KVPWYKG 45
           K PWYKG
Sbjct: 207 KTPWYKG 213


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = +3

Query: 129 PWTSAMPGAEPSRCLLPP 182
           PW S        RC+ PP
Sbjct: 137 PWISVQEQVPRFRCIGPP 154


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 189 STSGIAEFTNSSFPKFTFTTYHPH 260
           STS  A  T+S +P  +    H H
Sbjct: 77  STSPAARTTSSMYPYVSAAAAHHH 100


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -1

Query: 199 PDVLYSGGKRQRLGSAPGIAEV 134
           PD+++       +G  PG+ +V
Sbjct: 33  PDIIWVRADGSAVGDVPGLRQV 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,223
Number of Sequences: 438
Number of extensions: 2114
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)