Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1431
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   2.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   5.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   5.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    24   6.7  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   6.7  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    24   6.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   8.8  

>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 93  IGPVSPMCIRLYTNALTTNGPTRNLT*MMVLIYGKRRVALPIN*WSVF 236
           + P+    +  + + +  N P   LT   +  Y +R +  P+N WSV+
Sbjct: 301 LDPLDASLLLAFCHIIKNNNPDDGLTREEMAPYAERVLVYPVN-WSVY 347


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 262  ICWKQQLWPWNLHQQRGWWWRPCSLYKRN 348
            IC+ Q+LW  N +++  +  RP + Y  N
Sbjct: 949  ICYNQRLWRRNRNEKLIYRTRPLAEYSTN 977


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 218 KLVVGIPFYGRSF 256
           +LV GIPFYG SF
Sbjct: 111 QLVKGIPFYGYSF 123


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 70  HVDSVQFLTQLWYMISLHQPE 8
           H+  +QFLT++W  ++   P+
Sbjct: 681 HISRIQFLTKIWDNLNRFSPK 701


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 232 YSVLWTFIHFICWKQQLW 285
           +SVLW FI+   W  + W
Sbjct: 517 FSVLWDFIYETSWHIERW 534


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 242 YGRSFTLSAGNNNYGLGTYINKEAGGGDPAPYTNAT 349
           + +S +  +GN N G+GT    +  G D  P  N +
Sbjct: 197 FSQSRSAVSGNMNPGVGTLQQPQRAGSDTFPDLNTS 232


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 97   PITAQIIRHHVDSVQFLTQLWYMISLHQPE 8
            P++ +++RH +  +Q LT+    +S   PE
Sbjct: 1774 PVSRKVVRHILKPLQLLTKEAIFLSQTNPE 1803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,085
Number of Sequences: 5004
Number of extensions: 36863
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)