Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1431
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 50 4e-07
11_04_0234 + 15187065-15188241,15188316-15188494 48 2e-06
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 30 0.67
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 28 2.7
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 28 2.7
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 27 3.6
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 27 4.7
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 27 6.2
03_03_0076 - 14281757-14282201,14282227-14282579 27 6.2
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 27 6.2
09_02_0528 + 10253372-10254556 26 8.2
09_02_0298 - 7061908-7061913,7061952-7062032,7062363-7062564,706... 26 8.2
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 50.4 bits (115), Expect = 4e-07
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Frame = +2
Query: 26 YHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLYKRP-HDQWAYEKLNVNDGLNLWEEK 202
Y + + LD ++VM++ LR G A+ ++ + P +D+ ++ + + G+ W +
Sbjct: 216 YPSETVARSLDWVNVMAFGLRP--PGAANANATAFDAPLYDRASH--YSASYGVVSWLDA 271
Query: 203 GCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGDPAPYTNATGFWAYYEI 373
G P +K+V+GIP YGRS+ L N G+G + G +NATG +Y E+
Sbjct: 272 GVPASKVVMGIPLYGRSWFL-RNKANSGVGAPV---VAAGPKQRGSNATGAMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 48.4 bits (110), Expect = 2e-06
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 26 YHVPELCQELDAIHVMSYDLRGNWAGFADVHSPLY-KRPHDQWAYEKLNVNDGLNLWEEK 202
Y + ++ LD ++++++ L N + +PLY K H +Y G+ W +
Sbjct: 219 YPIDDMSSSLDWVNIITFSLHKN-SNVTTADAPLYDKDSHFSASY-------GVISWLDA 270
Query: 203 GCPTNKLVVGIPFYGRSFTLSAGNNNYGLGTYINKEAGGGDPAPYTNATGFWAYYEI 373
G P KLV+GIP +GRS+ L + N GLG A G +N G AY EI
Sbjct: 271 GLPPCKLVMGIPLFGRSWFLRNKDKN-GLGA---PTAAAGTKQRKSNQIGVIAYAEI 323
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 29.9 bits (64), Expect = 0.67
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -1
Query: 211 RATLLFP*IKTIIHVKFLVGPLVVRAFV*RRMHIGETGPITAQIIRH--HVDSVQFLT-Q 41
R +LFP I +I H+ VG VVRA V + G + A+ ++ D+V F+ +
Sbjct: 550 RKGILFPSISSIRHITARVGAAVVRAAVDEDLAEGRC-DVDARDLKSMTEADTVDFVARK 608
Query: 40 LWYMI 26
+WY I
Sbjct: 609 MWYPI 613
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 241 LWTFIHFICWKQQLWPWNLHQQRGWWWRPCSLYKRNWILGL 363
L TF+ +IC K L W L Q+R ++ L W+ GL
Sbjct: 477 LHTFMRYICHKSWLGGWFLPQKRSYF--ALKLPNGWWVFGL 515
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 113 VHSPLYKRPHDQWAYEKLNVNDGLNLWEEKGCPTNKLVVGIPFY 244
V SP + + ++N + LW EK C +++V GIP Y
Sbjct: 207 VDSPQFFNRLAESFISRINARFIVLLWGEKSCLNSEVVNGIPLY 250
>02_05_0681 +
30842038-30842301,30843067-30843300,30843409-30843578,
30844130-30844474,30844475-30844661,30844747-30844798,
30844843-30845108,30845302-30845400,30845577-30846292,
30846616-30847098,30847288-30847546
Length = 1024
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 225 TSLLVGQPFSSHKLRPSFTLSFS*AHWS*GRLYKGECTSAKPAQLPRRSYDITWIA 58
++L G PF +H++R SFS H G G CT++ R+ + W A
Sbjct: 295 STLDFGDPFRAHEMRCRLVASFS-WHKFVGCFLLGSCTNSGNLSRYRQKPPLPWSA 349
>05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 86 ADHTTSRG*RPVPDTALVHDIP 21
+D+T S RP+PD+ + DIP
Sbjct: 959 SDNTASDAKRPLPDSTYIEDIP 980
>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
Length = 740
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 143 DQWAYEKLNVNDGLNLWEEKGCPTNKLVVGIPFYGRSFTLSAGNN 277
D W + NVND ++ E PT+ L + F +++GN+
Sbjct: 451 DNWDEGQDNVNDNVDFLPEIPQPTDVLQINSSFASSILAVNSGNS 495
>03_03_0076 - 14281757-14282201,14282227-14282579
Length = 265
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 301 QQRGWWWRP 327
QQR WWWRP
Sbjct: 254 QQRLWWWRP 262
>01_06_1446 - 37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 281 YGLGTYINKEAGGGDPAPYTNA 346
Y G ++ E GGGDP PY A
Sbjct: 963 YYSGQELHVEHGGGDPPPYPQA 984
>09_02_0528 + 10253372-10254556
Length = 394
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 21 RDIMYQSCVRNWTLST*CRMICAVIGPVSPMCIRLYTNALTTNGPTRNLT*MMVLIYGK 197
RD + +CV+ L+ C ++ P SP + + A +NG R+LT + + GK
Sbjct: 139 RDHLLANCVKGGILAALCWVVFVPSSPRSPYSLLAHCLATMSNG--RDLTDVCFDVDGK 195
>09_02_0298 -
7061908-7061913,7061952-7062032,7062363-7062564,
7062665-7062890,7063030-7063143,7063213-7063270
Length = 228
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 135 RLYKGECTSAKPAQLPRRSYDITWI 61
RL KG C+ LP S +I W+
Sbjct: 32 RLLKGRCSLRSGGSLPSSSMEIQWV 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,770,860
Number of Sequences: 37544
Number of extensions: 269741
Number of successful extensions: 655
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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